Variant report

Variant	rs12798852
Chromosome Location	chr11:65984174-65984175
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:65983052..65986048-chr11:65987938..65993154,6	K562	blood:
2	chr11:65983181..65985305-chr11:65986434..65989438,4	K562	blood:

Variant related genes	Relation type
ENSG00000175115	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs11544832	1.00[LWK][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3335923	chr11:65741698-66175759	Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	117 gene(s)	inside rSNPs	diseases
2	esv1819302	chr11:65787660-66007018	Active TSS Enhancers Flanking Active TSS Strong transcription Weak transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
3	esv3407551	chr11:65794503-66158322	Weak transcription Genic enhancers Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	103 gene(s)	inside rSNPs	diseases
4	esv3392427	chr11:65981489-66273695	Enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	118 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:65958800-65989200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr11:65959200-65989400	Weak transcription	K562	blood
3	chr11:65961400-66011200	Weak transcription	Psoas Muscle	Psoas
4	chr11:65963000-65984200	Weak transcription	HUVEC	blood vessel
5	chr11:65964000-65989600	Weak transcription	Stomach Mucosa	stomach
6	chr11:65976400-65989200	Strong transcription	Primary T helper cells fromperipheralblood	blood
7	chr11:65976400-65989600	Strong transcription	Primary T cells fromperipheralblood	blood
8	chr11:65976600-66006000	Weak transcription	Pancreatic Islets	Pancreatic Islet
9	chr11:65976800-65989600	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
10	chr11:65976800-65996000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr11:65977000-65989800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
12	chr11:65977200-65984800	Weak transcription	NHDF-Ad	bronchial
13	chr11:65977200-65996000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
14	chr11:65977400-65990000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
15	chr11:65977400-66010600	Strong transcription	Fetal Stomach	stomach
16	chr11:65977600-65985200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr11:65977600-65989400	Strong transcription	Primary T helper cells PMA-I stimulated	--
18	chr11:65977600-65989400	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
19	chr11:65977600-65989600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
20	chr11:65977600-65989800	Strong transcription	Fetal Intestine Small	intestine
21	chr11:65977600-66018600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr11:65977800-65985200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr11:65977800-65987800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
24	chr11:65977800-65987800	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr11:65977800-65988800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr11:65977800-65988800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr11:65977800-65988800	Strong transcription	Lung	lung
28	chr11:65977800-65989400	Strong transcription	Adipose Nuclei	Adipose
29	chr11:65977800-65989800	Strong transcription	Primary T cells from cord blood	blood
30	chr11:65977800-65990000	Strong transcription	Fetal Muscle Leg	muscle
31	chr11:65978000-65989200	Strong transcription	Primary B cells from peripheral blood	blood
32	chr11:65978000-65989400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr11:65978000-65989800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
34	chr11:65978000-65993000	Strong transcription	Primary neutrophils fromperipheralblood	blood
35	chr11:65978800-65985400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
36	chr11:65978800-65989800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
37	chr11:65979600-65984200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
38	chr11:65979600-65987000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
39	chr11:65979600-65989800	Weak transcription	Rectal Mucosa Donor 31	rectum
40	chr11:65979800-66001200	Weak transcription	H9 Cell Line	embryonic stem cell
41	chr11:65980000-65994000	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
42	chr11:65980400-65989200	Strong transcription	Primary B cells from cord blood	blood
43	chr11:65980600-65988400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
44	chr11:65980600-65988600	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
45	chr11:65980600-65988800	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
46	chr11:65981200-65990200	Weak transcription	Fetal Kidney	kidney
47	chr11:65982000-65988800	Strong transcription	Primary monocytes fromperipheralblood	blood
48	chr11:65982000-65989000	Strong transcription	Esophagus	oesophagus
49	chr11:65982200-65989000	Strong transcription	Skeletal Muscle Male	skeletal muscle
50	chr11:65982200-65995800	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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