Variant report

Variant	rs12802285
Chromosome Location	chr11:93336949-93336950
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs12793625	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12801458	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs12803913	0.86[AMR][1000 genomes]
rs17651231	1.00[ASW][hapmap];1.00[GIH][hapmap];1.00[MKK][hapmap];1.00[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs34140012	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs35805434	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs61918484	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898181	chr11:93072843-93662459	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	119 gene(s)	inside rSNPs	diseases
2	esv275272	chr11:93332181-93336949	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:93336600-93337400	Enhancers	H1 Cell Line	embryonic stem cell
2	chr11:93336600-93337400	Enhancers	Spleen	Spleen
3	chr11:93336600-93337400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
4	chr11:93336600-93337800	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr11:93336600-93337800	Enhancers	Fetal Intestine Small	intestine
6	chr11:93336600-93338000	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr11:93336600-93339600	Enhancers	Primary monocytes fromperipheralblood	blood
8	chr11:93336800-93337000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr11:93336800-93337000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr11:93336800-93337200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
11	chr11:93336800-93337200	Enhancers	HUES6 Cell Line	embryonic stem cell
12	chr11:93336800-93337400	Enhancers	HUES48 Cell Line	embryonic stem cell
13	chr11:93336800-93337600	Enhancers	iPS-18 Cell Line	embryonic stem cell
14	chr11:93336800-93337800	Enhancers	Duodenum Mucosa	Duodenum
15	chr11:93336800-93337800	Enhancers	Fetal Intestine Large	intestine

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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