Variant report

Variant	rs12802512
Chromosome Location	chr11:76755178-76755179
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs11237070	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12799100	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2276282	1.00[CHB][hapmap]
rs34979367	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1816632	chr11:76751285-76927014	Enhancers Bivalent Enhancer Weak transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:76750200-76756800	Weak transcription	A549	lung
2	chr11:76751400-76758200	Weak transcription	Right Atrium	heart
3	chr11:76751600-76757000	Weak transcription	Pancreas	Pancrea
4	chr11:76751800-76756200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr11:76752000-76758200	Weak transcription	Spleen	Spleen
6	chr11:76752200-76756400	Weak transcription	Fetal Intestine Small	intestine
7	chr11:76753600-76757000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr11:76754400-76756800	Weak transcription	K562	blood
9	chr11:76754800-76755400	Enhancers	iPS-18 Cell Line	embryonic stem cell
10	chr11:76755000-76755200	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
11	chr11:76755000-76755200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
12	chr11:76755000-76755200	Bivalent Enhancer	Fetal Muscle Trunk	muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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