Variant report

Variant	rs12802650
Chromosome Location	chr11:19102767-19102768
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs1011179	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10833054	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1125217	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1503500	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1546329	0.80[CEU][hapmap]
rs7945401	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs905552	0.85[CEU][hapmap];0.90[JPT][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040805	chr11:19037871-19892803	Enhancers Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv540957	chr11:19037871-19892803	Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
3	nsv897030	chr11:19049478-19106045	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:19095200-19104000	Weak transcription	Esophagus	oesophagus
2	chr11:19098200-19103600	Enhancers	HUVEC	blood vessel
3	chr11:19098800-19102800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr11:19099000-19102800	Enhancers	Muscle Satellite Cultured Cells	--
5	chr11:19099400-19102800	Enhancers	NHDF-Ad	bronchial
6	chr11:19100600-19102800	Enhancers	Breast Myoepithelial Primary Cells	Breast
7	chr11:19100600-19102800	Enhancers	Osteobl	bone
8	chr11:19100600-19103000	Enhancers	NHEK	skin
9	chr11:19100800-19102800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr11:19100800-19103000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
11	chr11:19101000-19102800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr11:19101800-19102800	Enhancers	Brain Hippocampus Middle	brain
13	chr11:19102200-19103000	Enhancers	Pancreas	Pancrea
14	chr11:19102400-19106000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr11:19102400-19106000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr11:19102600-19109400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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