Variant report

Variant	rs12802656
Chromosome Location	chr11:16534415-16534416
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10832641	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11023983	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11600664	0.87[EUR][1000 genomes]
rs11603453	0.86[EUR][1000 genomes]
rs11603503	0.86[EUR][1000 genomes]
rs12795502	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12799418	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12801314	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4508168	0.86[EUR][1000 genomes]
rs5011327	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv553566	chr11:16329009-16799044	Strong transcription Weak transcription Enhancers Bivalent/Poised TSS ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
2	nsv897016	chr11:16455794-16691743	Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1035768	chr11:16530440-16578566	Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	esv2761650	chr11:16530452-16541623	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:16532200-16534600	Enhancers	Pancreatic Islets	Pancreatic Islet
2	chr11:16532400-16534800	Enhancers	Muscle Satellite Cultured Cells	--
3	chr11:16532600-16534600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr11:16532800-16535600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr11:16533200-16535000	Enhancers	Fetal Lung	lung
6	chr11:16533800-16535600	Weak transcription	Psoas Muscle	Psoas
7	chr11:16533800-16541200	Weak transcription	Fetal Heart	heart
8	chr11:16534400-16534600	Enhancers	NHLF	lung
9	chr11:16534400-16535800	Weak transcription	Cortex derived primary cultured neurospheres	brain

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links