Variant report

Variant	rs12803077
Chromosome Location	chr11:63638790-63638791
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:12)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:12 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:63634093..63635868-chr11:63638259..63640200,2	MCF-7	breast:
2	chr11:63621538..63623574-chr11:63638345..63640318,2	K562	blood:
3	chr11:63580382..63585529-chr11:63638701..63641803,4	K562	blood:
4	chr11:63603344..63615182-chr11:63634321..63647771,46	MCF-7	breast:
5	chr11:63637157..63639514-chr11:63645420..63648152,2	K562	blood:
6	chr11:63636831..63641695-chr11:63668952..63673218,5	K562	blood:
7	chr11:63631966..63634780-chr11:63636847..63639729,3	K562	blood:
8	chr11:63610591..63619595-chr11:63634759..63639809,13	MCF-7	breast:
9	chr11:63636556..63639041-chr11:63667851..63671875,3	MCF-7	breast:
10	chr11:63581119..63583081-chr11:63638472..63640533,2	K562	blood:
11	chr11:63604963..63609785-chr11:63634052..63642181,26	MCF-7	breast:
12	chr11:63628759..63635867-chr11:63636847..63643133,8	K562	blood:

No data

Variant related genes	Relation type
ENSG00000168005	Chromatin interaction
ENSG00000072518	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs2186565	1.00[AMR][1000 genomes]
rs59498475	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051171	chr11:62987064-63835715	Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	100 gene(s)	inside rSNPs	diseases
2	nsv468589	chr11:63515752-63713239	Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
3	nsv555180	chr11:63515752-63713239	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
4	esv1839119	chr11:63615554-63680052	Enhancers Flanking Active TSS Weak transcription Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:63619400-63639400	Weak transcription	Ovary	ovary
2	chr11:63619600-63639200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr11:63628800-63644200	Genic enhancers	Fetal Intestine Small	intestine
4	chr11:63629600-63638800	Enhancers	Stomach Mucosa	stomach
5	chr11:63630000-63640000	Enhancers	Primary monocytes fromperipheralblood	blood
6	chr11:63630600-63642200	Enhancers	Primary T helper naive cells from peripheral blood	blood
7	chr11:63630800-63639400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr11:63630800-63641600	Enhancers	Primary T helper cells fromperipheralblood	blood
9	chr11:63632400-63638800	Genic enhancers	Fetal Thymus	thymus
10	chr11:63632400-63642600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr11:63632400-63643400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
12	chr11:63632400-63643600	Enhancers	Pancreas	Pancrea
13	chr11:63632600-63639400	Enhancers	Rectal Mucosa Donor 31	rectum
14	chr11:63632600-63640800	Enhancers	Placenta	Placenta
15	chr11:63633000-63639200	Weak transcription	HepG2	liver
16	chr11:63633000-63639800	Enhancers	Fetal Heart	heart
17	chr11:63633000-63646800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr11:63633000-63646800	Weak transcription	Fetal Brain Female	brain
19	chr11:63633200-63644800	Enhancers	Brain Substantia Nigra	brain
20	chr11:63634200-63642400	Enhancers	Sigmoid Colon	Sigmoid Colon
21	chr11:63634800-63639000	Weak transcription	Pancreatic Islets	Pancreatic Islet
22	chr11:63635200-63639000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr11:63635600-63639400	Enhancers	Skeletal Muscle Female	skeletal muscle
24	chr11:63635600-63639800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr11:63635600-63641400	Enhancers	Esophagus	oesophagus
26	chr11:63635800-63639600	Enhancers	Colon Smooth Muscle	Colon
27	chr11:63635800-63639800	Enhancers	Adipose Nuclei	Adipose
28	chr11:63636000-63638800	Enhancers	Small Intestine	intestine
29	chr11:63636000-63639400	Enhancers	Colonic Mucosa	Colon
30	chr11:63636000-63639400	Enhancers	Duodenum Smooth Muscle	Duodenum
31	chr11:63636000-63641400	Enhancers	Spleen	Spleen
32	chr11:63636000-63642600	Enhancers	Brain Inferior Temporal Lobe	brain
33	chr11:63636000-63644800	Enhancers	Brain Angular Gyrus	brain
34	chr11:63636200-63639400	Enhancers	Liver	Liver
35	chr11:63636200-63640800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
36	chr11:63636400-63639600	Weak transcription	HUES48 Cell Line	embryonic stem cell
37	chr11:63636400-63639800	Enhancers	Left Ventricle	heart
38	chr11:63636400-63639800	Enhancers	Skeletal Muscle Male	skeletal muscle
39	chr11:63636400-63642000	Enhancers	Primary hematopoietic stem cells	blood
40	chr11:63636400-63642200	Enhancers	Fetal Muscle Leg	muscle
41	chr11:63636400-63642400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
42	chr11:63636400-63643000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
43	chr11:63636600-63639200	Weak transcription	HSMMtube	muscle
44	chr11:63636600-63639400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
45	chr11:63636600-63639400	Weak transcription	HUES64 Cell Line	embryonic stem cell
46	chr11:63636600-63639400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
47	chr11:63636600-63639400	Weak transcription	Fetal Kidney	kidney
48	chr11:63636600-63639800	Enhancers	HSMM	muscle
49	chr11:63637000-63638800	Enhancers	Right Ventricle	heart
50	chr11:63637000-63639400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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