Variant report

Variant	rs12804036
Chromosome Location	chr11:45510717-45510718
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs12792074	1.00[AFR][1000 genomes]
rs12792178	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12808136	1.00[AFR][1000 genomes]
rs35155354	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530619	chr11:45294176-45553928	Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv1045831	chr11:45419113-45580407	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv897310	chr11:45487041-45631953	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:45490200-45510800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr11:45505000-45510800	Weak transcription	Brain Anterior Caudate	brain
3	chr11:45506800-45510800	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr11:45507200-45510800	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr11:45507200-45510800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr11:45507200-45510800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr11:45507200-45511000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr11:45510400-45511400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr11:45510600-45511400	Enhancers	ES-I3 Cell Line	embryonic stem cell
10	chr11:45510600-45511400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr11:45510600-45511400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr11:45510600-45511400	Enhancers	iPS-18 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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