Variant report

Variant	rs12810996
Chromosome Location	chr12:64916278-64916279
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:64914513..64916387-chr12:64925086..64927590,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000256199	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs12302039	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1317532	0.92[CEU][hapmap];0.90[YRI][hapmap];0.94[AFR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832443	chr12:64878856-65057265	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:64912400-64927600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr12:64914800-64916800	Enhancers	Fetal Brain Male	brain
3	chr12:64915000-64916800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr12:64915000-64922400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr12:64915400-64916400	Enhancers	GM12878-XiMat	blood
6	chr12:64915400-64916800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr12:64915400-64916800	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr12:64915400-64916800	Enhancers	iPS-20b Cell Line	embryonic stem cell
9	chr12:64915400-64917000	Enhancers	ES-I3 Cell Line	embryonic stem cell
10	chr12:64915400-64917000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr12:64915400-64917400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr12:64915600-64916600	Enhancers	HUES64 Cell Line	embryonic stem cell
13	chr12:64915600-64916600	Flanking Active TSS	Dnd41	blood
14	chr12:64915600-64916800	Enhancers	HUES6 Cell Line	embryonic stem cell
15	chr12:64915600-64916800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
16	chr12:64915600-64917000	Enhancers	H1 Cell Line	embryonic stem cell
17	chr12:64915600-64917800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr12:64915600-64917800	Enhancers	HSMM	muscle
19	chr12:64915600-64918600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr12:64915800-64916600	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr12:64915800-64916800	Enhancers	H9 Cell Line	embryonic stem cell
22	chr12:64915800-64916800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr12:64915800-64916800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr12:64915800-64916800	Enhancers	HUES48 Cell Line	embryonic stem cell
25	chr12:64915800-64916800	Enhancers	iPS-15b Cell Line	embryonic stem cell
26	chr12:64915800-64916800	Enhancers	Cortex derived primary cultured neurospheres	brain
27	chr12:64915800-64916800	Enhancers	HMEC	breast
28	chr12:64916000-64916400	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr12:64916000-64916400	Enhancers	NHEK	skin
30	chr12:64916000-64916600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr12:64916000-64916600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
32	chr12:64916000-64916800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
33	chr12:64916000-64916800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
34	chr12:64916000-64916800	Enhancers	Fetal Muscle Leg	muscle
35	chr12:64916000-64916800	Enhancers	A549	lung
36	chr12:64916000-64916800	Enhancers	HSMMtube	muscle
37	chr12:64916000-64917000	Enhancers	NH-A	brain
38	chr12:64916200-64916400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
39	chr12:64916200-64916400	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
40	chr12:64916200-64916400	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
41	chr12:64916200-64916400	Bivalent Enhancer	K562	blood
42	chr12:64916200-64916600	Flanking Active TSS	Muscle Satellite Cultured Cells	--
43	chr12:64916200-64916600	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin03	Skin
44	chr12:64916200-64916600	Flanking Active TSS	Osteobl	bone
45	chr12:64916200-64916800	Flanking Active TSS	NHDF-Ad	bronchial
46	chr12:64916200-64917000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
47	chr12:64916200-64917400	Enhancers	NHLF	lung

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