Variant report

Variant	rs12812750
Chromosome Location	chr12:39363258-39363259
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10506132	0.85[ASN][1000 genomes]
rs11610886	0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs12809435	0.84[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs12812262	0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs12812749	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12813151	0.83[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs12813496	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12816546	0.80[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs12827197	0.80[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs12829888	0.89[AMR][1000 genomes]
rs1349257	0.80[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs1562728	0.80[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs17467376	0.85[ASN][1000 genomes]
rs2218762	0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2388174	0.80[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2388175	0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2388178	0.83[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2388179	0.83[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2892450	0.83[AMR][1000 genomes]
rs2892451	0.83[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs3914597	0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs4254106	0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs4411311	0.83[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs4438082	0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs61939594	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs7308161	0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs7308278	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs7952765	0.83[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs7954830	0.84[AMR][1000 genomes]
rs7958118	0.83[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs7967295	0.83[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs7968458	0.81[AMR][1000 genomes]
rs7968566	0.83[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs7970850	0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs7972590	0.83[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs7976609	0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs925827	0.83[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs925828	0.83[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs925829	0.83[AMR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1047623	chr12:39187817-39539939	Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
2	esv3389115	chr12:39221256-39448458	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv899009	chr12:39284077-39441096	Active TSS Bivalent/Poised TSS Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
4	esv2761733	chr12:39309714-39413045	Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Weak transcription	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:39363000-39363600	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
2	chr12:39363000-39364400	Enhancers	Fetal Brain Male	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links