Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs1037435	0.82[JPT][hapmap]
rs1037436	0.82[JPT][hapmap]
rs10736021	0.98[ASN][1000 genomes]
rs10785505	0.82[JPT][hapmap]
rs10785506	0.82[JPT][hapmap]
rs11182529	0.80[AMR][1000 genomes]
rs12231246	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1349621	0.82[JPT][hapmap]
rs1376997	0.82[JPT][hapmap]
rs1376998	1.00[CEU][hapmap];0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1377003	0.84[ASW][hapmap];0.86[CHD][hapmap];0.95[JPT][hapmap];0.83[MEX][hapmap];0.85[MKK][hapmap];0.82[AMR][1000 genomes]
rs1377280	0.86[CHB][hapmap];0.86[JPT][hapmap]
rs1452256	0.82[JPT][hapmap]
rs1452257	0.82[JPT][hapmap]
rs1908179	0.81[JPT][hapmap]
rs2198339	0.83[AMR][1000 genomes]
rs2270479	0.90[JPT][hapmap]
rs4143007	0.82[JPT][hapmap]
rs4768560	1.00[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];0.88[MKK][hapmap];1.00[TSI][hapmap];0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs728065	0.81[JPT][hapmap]
rs7966066	0.82[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049818	chr12:44486312-45133783	Enhancers ZNF genes & repeats Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:44918600-44972000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
2	chr12:44940200-44999600	Weak transcription	Primary T helper cells fromperipheralblood	blood
3	chr12:44942000-44949000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
4	chr12:44943400-44998600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
5	chr12:44944000-44948400	Weak transcription	Primary T helper cells PMA-I stimulated	--
6	chr12:44946400-44976400	Weak transcription	Primary T cells fromperipheralblood	blood
7	chr12:44947600-44950000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr12:44947800-44949000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr12:44948200-44948400	Enhancers	Fetal Brain Female	brain

Quick Search: