Variant report

Variant	rs12815754
Chromosome Location	chr12:32835751-32835752
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:32832189..32833738-chr12:32833878..32835983,2	MCF-7	breast:
2	chr12:32831164..32834168-chr12:32834322..32838647,4	K562	blood:

Variant related genes	Relation type
ENSG00000087470	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11052134	1.00[ASN][1000 genomes]
rs11052136	1.00[ASN][1000 genomes]
rs12366836	1.00[ASN][1000 genomes]
rs12579412	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12580531	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12821132	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs34032717	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs55891447	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56331606	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs56373028	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67215596	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs67335394	0.81[ASN][1000 genomes]
rs67573810	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7302961	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530421	chr12:32825335-33465991	Strong transcription Weak transcription Genic enhancers Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:110 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:32833200-32840800	Weak transcription	Primary T cells fromperipheralblood	blood
2	chr12:32833200-32841200	Weak transcription	Fetal Muscle Trunk	muscle
3	chr12:32833200-32841800	Weak transcription	Lung	lung
4	chr12:32833200-32841800	Weak transcription	Pancreas	Pancrea
5	chr12:32833200-32841800	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr12:32833200-32842200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr12:32833200-32846600	Weak transcription	Psoas Muscle	Psoas
8	chr12:32833200-32848400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr12:32833200-32848400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr12:32833200-32864000	Weak transcription	Esophagus	oesophagus
11	chr12:32833200-32864600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr12:32833400-32854200	Weak transcription	Placenta	Placenta
13	chr12:32833400-32859000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
14	chr12:32833400-32864000	Weak transcription	Thymus	Thymus
15	chr12:32833600-32836200	Weak transcription	Fetal Intestine Small	intestine
16	chr12:32833600-32836600	Weak transcription	Colonic Mucosa	Colon
17	chr12:32833600-32837800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
18	chr12:32833600-32838200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
19	chr12:32833600-32839800	Weak transcription	Aorta	Aorta
20	chr12:32833600-32840800	Weak transcription	Fetal Muscle Leg	muscle
21	chr12:32833600-32841400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
22	chr12:32833600-32847200	Weak transcription	HSMM	muscle
23	chr12:32833600-32854400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
24	chr12:32833600-32861400	Weak transcription	Right Atrium	heart
25	chr12:32833600-32861800	Weak transcription	Fetal Thymus	thymus
26	chr12:32833800-32836200	Weak transcription	Fetal Stomach	stomach
27	chr12:32833800-32838400	Weak transcription	Brain Germinal Matrix	brain
28	chr12:32833800-32859000	Weak transcription	H1 Cell Line	embryonic stem cell
29	chr12:32833800-32863000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
30	chr12:32834000-32848600	Weak transcription	Fetal Kidney	kidney
31	chr12:32834200-32835800	Enhancers	HepG2	liver
32	chr12:32834200-32836800	Weak transcription	Cortex derived primary cultured neurospheres	brain
33	chr12:32834200-32836800	Weak transcription	Osteobl	bone
34	chr12:32834200-32837000	Weak transcription	Monocytes-CD14+_RO01746	blood
35	chr12:32834200-32837800	Weak transcription	Fetal Lung	lung
36	chr12:32834200-32838000	Weak transcription	Brain Hippocampus Middle	brain
37	chr12:32834200-32838200	Weak transcription	Primary B cells from cord blood	blood
38	chr12:32834200-32839400	Weak transcription	Rectal Mucosa Donor 29	rectum
39	chr12:32834200-32841400	Weak transcription	HUES48 Cell Line	embryonic stem cell
40	chr12:32834200-32841600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
41	chr12:32834200-32842600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
42	chr12:32834200-32844600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
43	chr12:32834200-32844600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
44	chr12:32834200-32845400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
45	chr12:32834200-32847800	Weak transcription	Fetal Brain Female	brain
46	chr12:32834200-32848400	Weak transcription	Duodenum Mucosa	Duodenum
47	chr12:32834200-32854200	Weak transcription	Primary T helper cells fromperipheralblood	blood
48	chr12:32834200-32864800	Weak transcription	Colon Smooth Muscle	Colon
49	chr12:32834200-32865000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
50	chr12:32834200-32871400	Weak transcription	Skeletal Muscle Male	skeletal muscle

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