Variant report

Variant	rs12818844
Chromosome Location	chr12:39423806-39423807
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 67 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:64)

rs_ID	r²[population]
rs10506132	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10506133	0.89[ASN][1000 genomes]
rs10506134	0.89[ASN][1000 genomes]
rs10506135	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10876410	0.89[ASN][1000 genomes]
rs10876411	0.89[ASN][1000 genomes]
rs11170431	0.89[ASN][1000 genomes]
rs11170433	0.89[ASN][1000 genomes]
rs11608344	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11608360	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11608697	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11608857	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11610886	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11611172	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11612292	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11613411	0.81[EUR][1000 genomes]
rs12809435	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12809957	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12810545	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12812262	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12813151	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12815753	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12816546	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12817133	0.80[ASN][1000 genomes]
rs12817946	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12825680	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12827197	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12827288	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12829888	0.81[EUR][1000 genomes]
rs12832715	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12833449	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1349257	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1375795	0.89[ASN][1000 genomes]
rs1562728	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17467376	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2218762	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2388174	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2388175	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2388178	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2388179	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2892450	0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2892451	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3914597	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4254106	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4411311	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4438082	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4768548	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs61939594	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7308161	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7308278	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7952765	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7954830	0.91[EUR][1000 genomes]
rs7958118	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7967295	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7968458	0.88[EUR][1000 genomes]
rs7968566	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7970850	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7971416	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7972590	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7972629	0.82[EUR][1000 genomes]
rs7976609	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs925827	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs925828	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs925829	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1047623	chr12:39187817-39539939	Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
2	esv3389115	chr12:39221256-39448458	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv899009	chr12:39284077-39441096	Active TSS Bivalent/Poised TSS Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:39423600-39424000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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