Variant report

Variant	rs12819203
Chromosome Location	chr12:117345944-117345945
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10507276	0.93[CEU][hapmap];0.91[CHB][hapmap];0.95[CHD][hapmap];0.82[GIH][hapmap];0.82[JPT][hapmap];0.88[MEX][hapmap];0.92[TSI][hapmap]
rs11608681	0.93[CEU][hapmap];0.91[CHB][hapmap];0.82[JPT][hapmap]
rs11609741	1.00[ASW][hapmap];0.93[CEU][hapmap];0.91[CHB][hapmap];0.95[CHD][hapmap];0.82[JPT][hapmap];0.88[MEX][hapmap];0.92[TSI][hapmap]
rs11609917	0.93[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap]
rs11610984	1.00[ASW][hapmap];0.93[CEU][hapmap];0.91[CHB][hapmap];0.91[CHD][hapmap];0.86[GIH][hapmap];0.82[JPT][hapmap];0.88[MEX][hapmap];0.92[TSI][hapmap]
rs11614947	0.93[CEU][hapmap];0.91[CHB][hapmap];0.82[JPT][hapmap];0.84[EUR][1000 genomes]
rs3741465	0.93[CEU][hapmap]
rs6490100	1.00[ASW][hapmap];0.93[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.86[GIH][hapmap];0.82[JPT][hapmap];0.88[MEX][hapmap];0.88[TSI][hapmap]
rs7976384	0.93[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832524	chr12:117314110-117496576	Weak transcription Strong transcription Enhancers ZNF genes & repeats Bivalent Enhancer Genic enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs12819203	PEBP1	cis	cerebellum	SCAN
rs12819203	SDSL	cis	parietal	SCAN
rs12819203	SDS	cis	cerebellum	SCAN

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:117344600-117348200	Weak transcription	K562	blood
2	chr12:117345000-117348400	Weak transcription	Right Atrium	heart
3	chr12:117345400-117348200	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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