Variant report

Variant	rs12819583
Chromosome Location	chr12:74980849-74980850
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10506698	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs12308319	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs1353155	0.88[EUR][1000 genomes]
rs1389494	0.89[EUR][1000 genomes]
rs1493819	0.89[EUR][1000 genomes]
rs1493823	0.95[EUR][1000 genomes]
rs1493824	0.95[EUR][1000 genomes]
rs1493825	0.95[EUR][1000 genomes]
rs17114035	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs2201343	0.88[EUR][1000 genomes]
rs2605351	1.00[CEU][hapmap];0.85[CHB][hapmap]
rs2605362	0.81[EUR][1000 genomes]
rs2605364	0.96[EUR][1000 genomes]
rs2641489	0.95[EUR][1000 genomes]
rs2641490	0.95[EUR][1000 genomes]
rs2641493	0.90[EUR][1000 genomes]
rs2641495	0.90[EUR][1000 genomes]
rs2641497	0.88[EUR][1000 genomes]
rs2641498	0.83[EUR][1000 genomes]
rs2641500	0.87[EUR][1000 genomes]
rs2641501	0.88[EUR][1000 genomes]
rs2661714	0.88[EUR][1000 genomes]
rs34513355	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34881896	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35594724	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4475988	0.88[EUR][1000 genomes]
rs631620	0.96[EUR][1000 genomes]
rs7295394	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs748378	1.00[CEU][hapmap]
rs7965242	1.00[JPT][hapmap]
rs7966232	0.85[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039468	chr12:74080586-75000246	Weak transcription Enhancers Genic enhancers Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv899293	chr12:74835107-74995760	Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA target site	5 gene(s)	inside rSNPs	diseases
3	nsv899295	chr12:74854750-74984992	Active TSS Transcr. at gene 5' and 3' Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:74980000-74981000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
2	chr12:74980600-74981000	Enhancers	Brain Inferior Temporal Lobe	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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