Variant report

Variant	rs12821081
Chromosome Location	chr12:72977698-72977699
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 125 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:106)

rs_ID	r²[population]
rs10128837	0.88[CEU][hapmap];0.81[JPT][hapmap];0.82[YRI][hapmap]
rs10128854	0.88[CEU][hapmap];0.90[JPT][hapmap];0.83[YRI][hapmap]
rs1017987	0.89[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap]
rs1032331	0.90[CHB][hapmap];0.95[JPT][hapmap];0.96[YRI][hapmap]
rs1032332	0.95[CHB][hapmap];0.95[JPT][hapmap];0.95[YRI][hapmap]
rs10506656	0.89[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.96[YRI][hapmap]
rs10506657	0.89[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.96[YRI][hapmap]
rs10506658	0.89[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.96[YRI][hapmap]
rs10748199	0.95[CHB][hapmap];0.88[JPT][hapmap];0.95[YRI][hapmap]
rs10748202	0.86[CHB][hapmap]
rs10748203	0.86[CHB][hapmap]
rs10784971	0.89[CEU][hapmap];0.88[YRI][hapmap]
rs10784972	0.95[CHB][hapmap];0.95[JPT][hapmap];0.95[YRI][hapmap]
rs10784973	0.88[CEU][hapmap];0.85[JPT][hapmap]
rs10879451	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap]
rs11179228	0.90[CHB][hapmap]
rs11179240	0.88[CEU][hapmap];0.95[CHB][hapmap]
rs11179255	0.86[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap]
rs11179264	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs11179267	0.88[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs11179280	0.81[CHB][hapmap]
rs11179289	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs11179290	0.89[CHB][hapmap];0.83[JPT][hapmap]
rs11179293	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs11179298	0.90[CHB][hapmap];0.95[JPT][hapmap]
rs11179302	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs11179307	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs11179308	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11613768	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs11832989	0.91[CHB][hapmap]
rs11834716	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs12099552	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs1214894	0.81[CHB][hapmap]
rs1214897	0.81[CHB][hapmap]
rs1214899	0.81[CHB][hapmap]
rs12296996	0.89[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.95[YRI][hapmap]
rs12298218	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs12298495	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap]
rs12302064	0.86[CEU][hapmap];0.95[JPT][hapmap];0.95[YRI][hapmap]
rs12302437	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12304007	0.95[CHB][hapmap];0.95[JPT][hapmap];0.96[YRI][hapmap]
rs12304367	0.89[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.95[YRI][hapmap]
rs12310724	0.88[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.95[YRI][hapmap]
rs12322419	0.95[CHB][hapmap];0.88[JPT][hapmap];0.95[YRI][hapmap]
rs12581283	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs12582138	0.90[CHB][hapmap]
rs12816288	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs12824763	0.88[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs12824967	0.88[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs1347194	0.81[CHB][hapmap]
rs1389497	0.81[CHB][hapmap]
rs1560742	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs1817885	0.81[CHB][hapmap]
rs1864838	0.81[CHB][hapmap]
rs1873347	0.88[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs1873348	0.88[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.86[YRI][hapmap]
rs1873349	0.86[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap]
rs1899907	0.80[CHB][hapmap]
rs1907087	0.88[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.95[YRI][hapmap]
rs1908180	0.89[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap]
rs1965318	0.81[CHB][hapmap]
rs1968964	0.88[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.95[YRI][hapmap]
rs2130660	0.81[CHB][hapmap]
rs2272503	0.89[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.95[YRI][hapmap]
rs2272504	0.89[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.96[YRI][hapmap]
rs2272506	0.88[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.95[YRI][hapmap]
rs2887071	0.81[CHB][hapmap]
rs305396	0.81[CHB][hapmap]
rs305402	0.81[CHB][hapmap]
rs35902343	0.90[CHB][hapmap];0.95[JPT][hapmap]
rs3782367	0.81[CHB][hapmap]
rs3782368	0.94[CHB][hapmap];0.95[JPT][hapmap];0.81[YRI][hapmap]
rs3843025	0.82[CHB][hapmap]
rs3852549	0.81[CHB][hapmap]
rs3858591	0.89[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.95[YRI][hapmap]
rs3910234	0.80[CHB][hapmap]
rs3936356	0.90[CHB][hapmap];0.90[JPT][hapmap]
rs3952786	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs41387445	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs460406	0.82[CHB][hapmap]
rs7131984	0.82[CHB][hapmap]
rs7135547	0.81[CHB][hapmap]
rs7137054	0.91[CHB][hapmap]
rs723867	0.81[CHB][hapmap]
rs7295506	0.86[CHB][hapmap]
rs7295898	0.88[CEU][hapmap];0.95[CHB][hapmap]
rs7296349	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap]
rs7297703	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs7298834	0.88[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs7299196	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs7303841	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs7309263	0.81[CHB][hapmap]
rs7309330	0.80[CHB][hapmap]
rs7310174	0.88[CEU][hapmap];0.90[JPT][hapmap];0.86[YRI][hapmap]
rs7311350	0.90[CHB][hapmap];0.81[JPT][hapmap]
rs7315299	0.88[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs7315407	0.88[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs7955512	0.89[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.96[YRI][hapmap]
rs7955871	0.88[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.95[YRI][hapmap]
rs7964031	0.88[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.91[YRI][hapmap]
rs7967001	0.81[CHB][hapmap]
rs7976677	0.88[CEU][hapmap];0.86[CHB][hapmap];0.95[JPT][hapmap];0.85[YRI][hapmap]
rs7978913	0.89[CEU][hapmap];0.87[YRI][hapmap]
rs7978934	0.88[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.86[YRI][hapmap]
rs954147	0.80[CHB][hapmap]
rs972421	0.95[CHB][hapmap];0.95[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:19 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2422452	chr12:72485933-73175581	Flanking Bivalent TSS/Enh Active TSS Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv899257	chr12:72569746-73145896	ZNF genes & repeats Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
3	nsv1044083	chr12:72647640-73275526	Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Genic enhancers Strong transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
4	nsv469465	chr12:72655925-73259114	Weak transcription Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
5	nsv559363	chr12:72655925-73259114	Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
6	nsv868884	chr12:72664763-73241518	Enhancers Bivalent/Poised TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
7	nsv817280	chr12:72820558-73508605	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
8	nsv899259	chr12:72885554-73011367	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Genic enhancers Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	nsv832454	chr12:72940798-73081180	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
10	esv1805187	chr12:72949787-73013475	Enhancers Strong transcription Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
11	esv3497739	chr12:72977572-72977937	Weak transcription Active TSS	n/a	n/a	inside rSNPs	diseases
12	esv3497740	chr12:72977602-72977885	Active TSS Weak transcription	n/a	n/a	inside rSNPs	diseases
13	esv3497741	chr12:72977602-72977955	Weak transcription Active TSS	n/a	n/a	inside rSNPs	diseases
14	esv3488975	chr12:72977629-72977926	Active TSS Weak transcription	n/a	n/a	inside rSNPs	diseases
15	esv3488964	chr12:72977640-72977880	Weak transcription Active TSS	n/a	n/a	inside rSNPs	diseases
16	esv3786	chr12:72977673-72977924	Weak transcription Active TSS	n/a	n/a	inside rSNPs	diseases
17	esv987864	chr12:72977697-72977859	Weak transcription Active TSS	n/a	n/a	inside rSNPs	diseases
18	esv3488986	chr12:72977698-72977861	Weak transcription Active TSS	n/a	n/a	inside rSNPs	diseases
19	esv3497743	chr12:72977698-72977861	Active TSS Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:72958200-72984400	Weak transcription	Pancreas	Pancrea
2	chr12:72964400-72986800	Weak transcription	Fetal Intestine Large	intestine
3	chr12:72970600-72982800	Weak transcription	Ovary	ovary
4	chr12:72971200-72978600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr12:72977400-72978000	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin

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