Variant report

Variant	rs12821926
Chromosome Location	chr12:4915652-4915653
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs12815495	0.89[ASN][1000 genomes]
rs12826294	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs16931723	0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs16931724	0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17702448	0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17775040	0.83[EUR][1000 genomes]
rs36035339	0.94[ASN][1000 genomes]
rs6489574	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6489575	0.87[CEU][hapmap];1.00[CHB][hapmap];0.89[ASN][1000 genomes]
rs7297411	0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7958711	0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7971461	0.87[CEU][hapmap];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs972883	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs972884	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs12821926	WNK1	cis	parietal	SCAN

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:4884400-4918200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr12:4901000-4917800	Weak transcription	Brain Germinal Matrix	brain
3	chr12:4901200-4917800	Weak transcription	Fetal Brain Female	brain
4	chr12:4903800-4917600	Weak transcription	Fetal Brain Male	brain
5	chr12:4915400-4916000	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
6	chr12:4915400-4918000	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
7	chr12:4915400-4918200	Enhancers	Primary T helper cells fromperipheralblood	blood
8	chr12:4915600-4916400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
9	chr12:4915600-4916800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
10	chr12:4915600-4917600	Enhancers	GM12878-XiMat	blood
11	chr12:4915600-4917800	Enhancers	Primary T helper cells PMA-I stimulated	--
12	chr12:4915600-4918000	Enhancers	Primary T helper naive cells from peripheral blood	blood
13	chr12:4915600-4920000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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