Variant report

Variant	rs12821990
Chromosome Location	chr12:41301834-41301835
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs11179721	0.86[AMR][1000 genomes]
rs12318791	1.00[MEX][hapmap]
rs12809592	0.90[AMR][1000 genomes]
rs12811306	0.95[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12812222	0.95[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12812376	0.95[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12813013	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12815418	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12816087	0.95[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12821567	0.90[AMR][1000 genomes]
rs12825145	0.90[AMR][1000 genomes]
rs12825902	0.90[AMR][1000 genomes]
rs12828342	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12828389	0.90[AMR][1000 genomes]
rs12828796	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12829787	0.82[AMR][1000 genomes]
rs12833053	0.90[AMR][1000 genomes]
rs34016577	0.90[AMR][1000 genomes]
rs34128411	0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs34180877	0.82[AMR][1000 genomes]
rs34482675	0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs34483042	0.89[AMR][1000 genomes]
rs34554849	0.90[AMR][1000 genomes]
rs34601389	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs34622861	0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs34739748	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34823642	0.90[AMR][1000 genomes]
rs35068475	0.95[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs35135815	0.90[AMR][1000 genomes]
rs35143604	0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs35168538	0.90[AMR][1000 genomes]
rs35188176	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35243767	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs35328876	0.95[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs35450098	0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs35462205	0.95[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs35582145	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs35617364	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs35636053	0.90[AMR][1000 genomes]
rs35665037	0.90[AMR][1000 genomes]
rs35684552	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35716153	0.90[AMR][1000 genomes]
rs35742712	0.90[AMR][1000 genomes]
rs35751491	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs35958887	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55639255	0.90[AMR][1000 genomes]
rs71449786	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs71449788	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs71449789	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71449790	0.95[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs71449791	0.95[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs71449793	0.95[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs71449794	0.95[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs71449796	0.90[AMR][1000 genomes]
rs71449797	0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs71449802	0.90[AMR][1000 genomes]
rs71451503	0.86[AMR][1000 genomes]
rs71451512	0.90[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427909	chr12:41054306-41322257	Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Enhancers Weak transcription Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv832380	chr12:41132306-41323961	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv497867	chr12:41286305-41728650	Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:41285000-41304600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr12:41297200-41338600	Weak transcription	Brain Hippocampus Middle	brain
3	chr12:41297400-41328600	Weak transcription	Brain Cingulate Gyrus	brain
4	chr12:41297400-41338600	Weak transcription	Brain Angular Gyrus	brain
5	chr12:41297400-41346400	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr12:41300400-41302200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr12:41300400-41302200	Enhancers	NHEK	skin
8	chr12:41300600-41302000	Enhancers	HMEC	breast
9	chr12:41300600-41302200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr12:41301200-41316000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
11	chr12:41301400-41302000	Enhancers	A549	lung
12	chr12:41301800-41302000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links