Variant report
| Variant | rs12822793 |
|---|---|
| Chromosome Location | chr12:83755167-83755168 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
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| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr12:83749693..83752488-chr12:83754294..83755819,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:14)
| rs_ID | r2[population] |
|---|---|
| rs10862648 | 0.97[EUR][1000 genomes] |
| rs11115769 | 0.97[EUR][1000 genomes] |
| rs12308147 | 0.97[EUR][1000 genomes] |
| rs12426951 | 0.97[EUR][1000 genomes] |
| rs12818087 | 0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12822324 | 0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs12826083 | 0.92[ASN][1000 genomes] |
| rs34334422 | 0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs35072063 | 0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs61930894 | 0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7314294 | 0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs73363306 | 0.86[AFR][1000 genomes] |
| rs7488061 | 0.97[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs7972020 | 0.83[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv521849 | chr12:83013783-83991479 | Weak transcription ZNF genes & repeats Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 16 gene(s) | inside rSNPs | diseases |
| 2 | nsv559559 | chr12:83505512-83765069 | ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 3 | nsv1042674 | chr12:83620899-83942628 | Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Active TSS | Chromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 4 | nsv428593 | chr12:83648236-83761301 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr12:83754800-83755600 | Enhancers | Fetal Lung | lung |
