Variant report

Variant	rs12825098
Chromosome Location	chr12:63054660-63054661
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs12829785	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs35499412	1.00[AFR][1000 genomes]
rs35646256	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv741	chr12:63038255-63064846	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:66 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:63035200-63069800	Weak transcription	Left Ventricle	heart
2	chr12:63037200-63069600	Weak transcription	Fetal Intestine Large	intestine
3	chr12:63039200-63070000	Weak transcription	Pancreas	Pancrea
4	chr12:63047600-63058000	Weak transcription	A549	lung
5	chr12:63047800-63057200	Weak transcription	Lung	lung
6	chr12:63047800-63062000	Weak transcription	Stomach Mucosa	stomach
7	chr12:63047800-63069600	Weak transcription	Liver	Liver
8	chr12:63049000-63054800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr12:63049000-63069600	Weak transcription	Primary hematopoietic stem cells	blood
10	chr12:63049000-63070000	Weak transcription	Gastric	stomach
11	chr12:63049200-63055400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
12	chr12:63049200-63070000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr12:63049400-63057000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr12:63049600-63055800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr12:63049800-63055000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr12:63049800-63055200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr12:63050000-63070200	Weak transcription	Ovary	ovary
18	chr12:63050200-63054800	Enhancers	ES-I3 Cell Line	embryonic stem cell
19	chr12:63050800-63066600	Weak transcription	Fetal Stomach	stomach
20	chr12:63051200-63069600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
21	chr12:63051400-63054800	Weak transcription	Fetal Intestine Small	intestine
22	chr12:63052000-63072400	Strong transcription	HepG2	liver
23	chr12:63052400-63055200	Enhancers	HUVEC	blood vessel
24	chr12:63052600-63055200	Enhancers	NHDF-Ad	bronchial
25	chr12:63052800-63055200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr12:63053000-63054800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
27	chr12:63053200-63055200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr12:63053200-63055400	Enhancers	iPS-15b Cell Line	embryonic stem cell
29	chr12:63053400-63054800	Weak transcription	HSMM	muscle
30	chr12:63053600-63054800	Weak transcription	Muscle Satellite Cultured Cells	--
31	chr12:63053600-63055200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
32	chr12:63053600-63055200	Enhancers	Osteobl	bone
33	chr12:63053600-63055400	Enhancers	HMEC	breast
34	chr12:63053800-63054800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
35	chr12:63053800-63055200	Enhancers	NHLF	lung
36	chr12:63053800-63056000	Enhancers	H1 Cell Line	embryonic stem cell
37	chr12:63053800-63056200	Enhancers	HUES64 Cell Line	embryonic stem cell
38	chr12:63053800-63062200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
39	chr12:63053800-63069600	Weak transcription	Aorta	Aorta
40	chr12:63054000-63054800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
41	chr12:63054000-63055000	Enhancers	HUES48 Cell Line	embryonic stem cell
42	chr12:63054000-63055000	Enhancers	iPS-18 Cell Line	embryonic stem cell
43	chr12:63054000-63055000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
44	chr12:63054000-63055600	Enhancers	HUES6 Cell Line	embryonic stem cell
45	chr12:63054000-63058800	Weak transcription	Fetal Muscle Leg	muscle
46	chr12:63054000-63059600	Weak transcription	Brain Hippocampus Middle	brain
47	chr12:63054000-63059800	Weak transcription	Brain Angular Gyrus	brain
48	chr12:63054000-63060800	Weak transcription	Brain Cingulate Gyrus	brain
49	chr12:63054000-63066800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
50	chr12:63054000-63069800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links