Variant report

Variant	rs12825505
Chromosome Location	chr12:26269414-26269415
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:26267272..26269559-chr12:26803313..26806107,3	MCF-7	breast:
2	chr12:26268041..26270216-chr12:26273442..26275781,2	K562	blood:

Variant related genes	Relation type
ENSG00000123096	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs1059303	1.00[ASN][1000 genomes]
rs12811394	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34815301	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4963955	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71452005	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898932	chr12:26262137-26283482	Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
2	nsv898933	chr12:26262137-26285006	Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:62 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:26267400-26270000	Weak transcription	Lung	lung
2	chr12:26267400-26274800	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr12:26267800-26270200	Enhancers	Primary B cells from peripheral blood	blood
4	chr12:26267800-26270600	Enhancers	K562	blood
5	chr12:26267800-26272200	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr12:26267800-26275000	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr12:26268000-26269600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr12:26268000-26269600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr12:26268000-26269600	Weak transcription	A549	lung
10	chr12:26268000-26269600	Weak transcription	HSMM	muscle
11	chr12:26268000-26269800	Weak transcription	Primary B cells from cord blood	blood
12	chr12:26268000-26270000	Enhancers	Fetal Muscle Leg	muscle
13	chr12:26268000-26270800	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
14	chr12:26268000-26272200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr12:26268000-26272200	Weak transcription	Aorta	Aorta
16	chr12:26268000-26272200	Weak transcription	Brain Inferior Temporal Lobe	brain
17	chr12:26268000-26273800	Weak transcription	Duodenum Smooth Muscle	Duodenum
18	chr12:26268000-26274600	Weak transcription	Right Ventricle	heart
19	chr12:26268000-26274800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr12:26268000-26275000	Weak transcription	Hela-S3	cervix
21	chr12:26268200-26269600	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell
22	chr12:26268200-26269600	Weak transcription	NHEK	skin
23	chr12:26268200-26270000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
24	chr12:26268200-26271000	Enhancers	Breast Myoepithelial Primary Cells	Breast
25	chr12:26268200-26271600	Weak transcription	HUVEC	blood vessel
26	chr12:26268200-26272200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
27	chr12:26268200-26272400	Weak transcription	NH-A	brain
28	chr12:26268200-26273600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr12:26268200-26274600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr12:26268400-26269600	Weak transcription	Rectal Smooth Muscle	rectum
31	chr12:26268400-26269800	Weak transcription	Cortex derived primary cultured neurospheres	brain
32	chr12:26268400-26269800	Weak transcription	Duodenum Mucosa	Duodenum
33	chr12:26268400-26269800	Weak transcription	Fetal Heart	heart
34	chr12:26268400-26271400	Weak transcription	Adipose Nuclei	Adipose
35	chr12:26268400-26271600	Enhancers	Fetal Intestine Small	intestine
36	chr12:26268400-26272200	Weak transcription	Brain Angular Gyrus	brain
37	chr12:26268400-26272200	Enhancers	Skeletal Muscle Male	skeletal muscle
38	chr12:26268400-26272800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
39	chr12:26268600-26269600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
40	chr12:26268600-26269600	Weak transcription	Pancreatic Islets	Pancreatic Islet
41	chr12:26268600-26269600	Weak transcription	Stomach Mucosa	stomach
42	chr12:26268600-26269600	Weak transcription	NHDF-Ad	bronchial
43	chr12:26268600-26269800	Weak transcription	Stomach Smooth Muscle	stomach
44	chr12:26268600-26270000	Enhancers	Psoas Muscle	Psoas
45	chr12:26268800-26270200	Weak transcription	Rectal Mucosa Donor 31	rectum
46	chr12:26268800-26271000	Weak transcription	Brain Cingulate Gyrus	brain
47	chr12:26268800-26272200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
48	chr12:26269000-26269600	Enhancers	Left Ventricle	heart
49	chr12:26269000-26269600	Enhancers	Right Atrium	heart
50	chr12:26269000-26270000	Weak transcription	Colon Smooth Muscle	Colon

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