Variant report
| Variant | rs12829840 |
|---|---|
| Chromosome Location | chr8:63203423-63203424 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:20)
| rs_ID | r2[population] |
|---|---|
| rs10748267 | 0.87[ASN][1000 genomes] |
| rs10785186 | 0.81[ASN][1000 genomes] |
| rs10879831 | 0.85[ASN][1000 genomes] |
| rs10879858 | 0.86[ASN][1000 genomes] |
| rs10879867 | 0.82[AMR][1000 genomes];0.86[ASN][1000 genomes] |
| rs11180448 | 0.82[ASN][1000 genomes] |
| rs1431104 | 0.86[ASN][1000 genomes] |
| rs1431110 | 0.86[ASN][1000 genomes] |
| rs1431112 | 0.86[ASN][1000 genomes] |
| rs1864611 | 0.86[ASN][1000 genomes] |
| rs1864613 | 0.86[ASN][1000 genomes] |
| rs2163416 | 0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs281830 | 0.88[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs4238081 | 0.85[ASN][1000 genomes] |
| rs4767999 | 0.83[ASN][1000 genomes] |
| rs4768334 | 0.95[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs7305919 | 0.94[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs7954881 | 0.87[ASN][1000 genomes] |
| rs7963760 | 0.83[ASN][1000 genomes] |
| rs975602 | 0.86[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1019143 | chr8:63142202-63390820 | Bivalent/Poised TSS Weak transcription Flanking Active TSS Bivalent Enhancer Enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 2 | esv2757277 | chr8:63156123-63260182 | Active TSS Flanking Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| 3 | esv2759621 | chr8:63156123-63260182 | Enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr8:63191000-63209200 | Weak transcription | Cortex derived primary cultured neurospheres | brain |
