Variant report

Variant	rs1282999
Chromosome Location	chr3:111584396-111584397
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:111583879..111585669-chr3:111695722..111698206,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000144827	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs1282979	1.00[AMR][1000 genomes]
rs1282996	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829676	chr3:111464087-111619200	Genic enhancers Strong transcription Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:86 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:111579400-111585000	Weak transcription	Gastric	stomach
2	chr3:111579600-111584800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr3:111579800-111584400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr3:111579800-111588400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr3:111579800-111589000	Weak transcription	Pancreas	Pancrea
6	chr3:111580000-111589200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr3:111580400-111584600	Enhancers	HepG2	liver
8	chr3:111580600-111584600	Enhancers	Fetal Stomach	stomach
9	chr3:111580600-111585800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr3:111580800-111584600	Enhancers	NHDF-Ad	bronchial
11	chr3:111580800-111584800	Enhancers	Liver	Liver
12	chr3:111580800-111585200	Enhancers	HMEC	breast
13	chr3:111581400-111584800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr3:111581400-111586000	Enhancers	Placenta Amnion	Placenta Amnion
15	chr3:111581400-111593800	Weak transcription	Fetal Muscle Trunk	muscle
16	chr3:111581600-111584600	Enhancers	ES-I3 Cell Line	embryonic stem cell
17	chr3:111581600-111584600	Enhancers	Breast Myoepithelial Primary Cells	Breast
18	chr3:111581600-111584600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr3:111581800-111584600	Enhancers	HUES6 Cell Line	embryonic stem cell
20	chr3:111581800-111585600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr3:111582000-111584600	Enhancers	Stomach Mucosa	stomach
22	chr3:111582200-111585000	Weak transcription	Left Ventricle	heart
23	chr3:111582200-111585000	Weak transcription	Spleen	Spleen
24	chr3:111582200-111585400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr3:111582200-111585800	Enhancers	iPS-18 Cell Line	embryonic stem cell
26	chr3:111582200-111586800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr3:111582200-111586800	Weak transcription	Placenta	Placenta
28	chr3:111582200-111593200	Weak transcription	Lung	lung
29	chr3:111582800-111584600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
30	chr3:111582800-111584600	Enhancers	Fetal Intestine Large	intestine
31	chr3:111583000-111584600	Enhancers	iPS-15b Cell Line	embryonic stem cell
32	chr3:111583000-111584800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
33	chr3:111583000-111587600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
34	chr3:111583200-111584400	Enhancers	HUES48 Cell Line	embryonic stem cell
35	chr3:111583200-111584400	Weak transcription	Duodenum Mucosa	Duodenum
36	chr3:111583200-111584600	Flanking Active TSS	HUVEC	blood vessel
37	chr3:111583200-111585200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
38	chr3:111583200-111585200	Enhancers	Fetal Muscle Leg	muscle
39	chr3:111583400-111584600	Enhancers	Fetal Kidney	kidney
40	chr3:111583600-111584400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
41	chr3:111583600-111584400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
42	chr3:111583600-111584400	Flanking Active TSS	Adipose Nuclei	Adipose
43	chr3:111583600-111584400	Flanking Active TSS	Colon Smooth Muscle	Colon
44	chr3:111583600-111584400	Enhancers	Fetal Intestine Small	intestine
45	chr3:111583600-111584600	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
46	chr3:111583600-111584600	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
47	chr3:111583600-111584600	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
48	chr3:111583600-111584600	Flanking Active TSS	Muscle Satellite Cultured Cells	--
49	chr3:111583600-111584600	Enhancers	Fetal Lung	lung
50	chr3:111583600-111584600	Flanking Active TSS	Hela-S3	cervix

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