Variant report

Variant	rs12831851
Chromosome Location	chr12:29179554-29179555
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs12832977	1.00[AFR][1000 genomes]
rs35195316	1.00[AFR][1000 genomes]
rs35426167	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532233	chr12:29009388-29496179	Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv995123	chr12:29095272-29571558	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
3	esv2758301	chr12:29110782-29289849	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	esv2759888	chr12:29110782-29289849	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:29177400-29182800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr12:29178400-29179600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
3	chr12:29178400-29179600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
4	chr12:29178400-29179600	Enhancers	Primary T killer memory cells from peripheral blood	blood
5	chr12:29178400-29179800	Enhancers	Primary T cells from cord blood	blood
6	chr12:29178600-29179600	Enhancers	Primary T helper cells PMA-I stimulated	--
7	chr12:29178600-29179800	Enhancers	Primary T helper naive cells from peripheral blood	blood
8	chr12:29178600-29179800	Enhancers	Dnd41	blood
9	chr12:29178800-29179600	Enhancers	Primary T helper cells fromperipheralblood	blood
10	chr12:29179000-29179600	Enhancers	Fetal Thymus	thymus
11	chr12:29179200-29179600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
12	chr12:29179200-29179600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr12:29179200-29179600	Enhancers	HSMMtube	muscle
14	chr12:29179400-29179800	Bivalent Enhancer	Primary T helper memory cells from peripheral blood 1	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links