The 2.0 version of rSNPBase

Variant report

Variant rs1284854
Chromosome Location chr1:213071445-213071446
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:125 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:213032600-213073000 Weak transcription Colonic Mucosa Colon
2 chr1:213032600-213073000 Weak transcription Esophagus oesophagus
3 chr1:213035800-213073000 Weak transcription Small Intestine intestine
4 chr1:213037600-213073200 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
5 chr1:213038400-213072000 Weak transcription Pancreatic Islets Pancreatic Islet
6 chr1:213039600-213073000 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
7 chr1:213040400-213073000 Strong transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
8 chr1:213043200-213073400 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
9 chr1:213047000-213073600 Strong transcription Foreskin Keratinocyte Primary Cells skin03 Skin
10 chr1:213049000-213073000 Weak transcription HSMMtube muscle
11 chr1:213049800-213072400 Weak transcription Fetal Brain Male brain
12 chr1:213049800-213073200 Strong transcription H9 Derived Neuron Cultured Cells ES cell derived
13 chr1:213049800-213073200 Weak transcription Spleen Spleen
14 chr1:213052200-213073000 Strong transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
15 chr1:213052800-213073400 Strong transcription Fetal Adrenal Gland Adrenal Gland
16 chr1:213053400-213073800 Strong transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
17 chr1:213053600-213073000 Strong transcription Breast Myoepithelial Primary Cells Breast
18 chr1:213053800-213073200 Strong transcription HUES48 Cell Line embryonic stem cell
19 chr1:213053800-213073200 Strong transcription HUES6 Cell Line embryonic stem cell
20 chr1:213054400-213073200 Strong transcription HUES64 Cell Line embryonic stem cell
21 chr1:213055000-213073600 Strong transcription ES-UCSF4 Cell Line embryonic stem cell
22 chr1:213055200-213073200 Strong transcription H1 Cell Line embryonic stem cell
23 chr1:213056000-213072200 Strong transcription ES-I3 Cell Line embryonic stem cell
24 chr1:213056200-213072000 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
25 chr1:213056200-213074200 Strong transcription Duodenum Mucosa Duodenum
26 chr1:213056400-213073400 Strong transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
27 chr1:213056600-213073600 Strong transcription Foreskin Keratinocyte Primary Cells skin02 Skin
28 chr1:213056800-213073000 Strong transcription Foreskin Melanocyte Primary Cells skin03 Skin
29 chr1:213057000-213072200 Strong transcription Fetal Muscle Leg muscle
30 chr1:213057000-213073400 Strong transcription Fetal Intestine Large intestine
31 chr1:213057600-213075000 Weak transcription Right Ventricle heart
32 chr1:213058000-213073400 Strong transcription A549 lung
33 chr1:213058600-213073000 Weak transcription Brain Germinal Matrix brain
34 chr1:213059400-213073600 Strong transcription Primary T cells from cord blood blood
35 chr1:213060400-213072800 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
36 chr1:213061800-213071600 Strong transcription Left Ventricle heart
37 chr1:213062400-213073400 Weak transcription Psoas Muscle Psoas
38 chr1:213062600-213075000 Weak transcription Thymus Thymus
39 chr1:213063400-213072000 Weak transcription Brain Angular Gyrus brain
40 chr1:213063600-213074800 Weak transcription ES-WA7 Cell Line embryonic stem cell
41 chr1:213063800-213073200 Weak transcription Skeletal Muscle Male skeletal muscle
42 chr1:213064000-213073000 Weak transcription Primary T killer naive cells fromperipheralblood blood
43 chr1:213064400-213073000 Weak transcription NHEK skin
44 chr1:213064400-213073200 Weak transcription Primary T helper naive cells fromperipheralblood blood
45 chr1:213064400-213073200 Weak transcription NHDF-Ad bronchial
46 chr1:213065400-213073800 Strong transcription Foreskin Fibroblast Primary Cells skin01 Skin
47 chr1:213065800-213073000 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
48 chr1:213065800-213073200 Weak transcription Brain Cingulate Gyrus brain
49 chr1:213066400-213072000 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
50 chr1:213066400-213075400 Weak transcription Rectal Smooth Muscle rectum

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Last update: Aug 31, 2015