Variant report

Variant	rs12853631
Chromosome Location	chr13:89345524-89345525
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs12427865	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs12854250	0.82[JPT][hapmap]
rs1326421	0.92[ASN][1000 genomes]
rs1326422	0.91[ASN][1000 genomes]
rs1326423	0.83[ASN][1000 genomes]
rs1326424	0.94[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs1326426	0.84[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs1326427	0.83[ASN][1000 genomes]
rs1326428	0.91[ASN][1000 genomes]
rs1326439	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1326444	0.86[ASN][1000 genomes]
rs1409452	0.91[ASN][1000 genomes]
rs1409453	0.93[ASN][1000 genomes]
rs1409454	0.91[ASN][1000 genomes]
rs1536352	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1536355	0.91[ASN][1000 genomes]
rs1536356	0.83[ASN][1000 genomes]
rs1536357	0.83[ASN][1000 genomes]
rs1536358	0.91[ASN][1000 genomes]
rs1853978	0.89[ASN][1000 genomes]
rs1887112	0.89[EUR][1000 genomes]
rs1926478	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1952189	0.91[ASN][1000 genomes]
rs2026570	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2038934	0.84[ASN][1000 genomes]
rs2038935	0.83[ASN][1000 genomes]
rs2225048	0.91[ASN][1000 genomes]
rs4310726	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4447288	0.85[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs4519197	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4547212	0.95[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs6492230	0.92[ASN][1000 genomes]
rs7326991	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7330466	0.90[ASN][1000 genomes]
rs7335014	0.89[ASN][1000 genomes]
rs7335817	0.80[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs7983711	0.89[ASN][1000 genomes]
rs7983924	0.91[ASN][1000 genomes]
rs7987127	0.93[ASN][1000 genomes]
rs7987540	0.91[ASN][1000 genomes]
rs7993257	0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8000708	0.83[ASN][1000 genomes]
rs8000777	0.91[ASN][1000 genomes]
rs8002705	0.90[ASN][1000 genomes]
rs9301420	0.95[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs9301421	0.85[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs9515129	0.91[ASN][1000 genomes]
rs9521558	0.91[ASN][1000 genomes]
rs9521561	0.91[ASN][1000 genomes]
rs9521889	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051177	chr13:89219432-89359036	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv900816	chr13:89224649-89392881	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv1043206	chr13:89296779-89417347	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv900817	chr13:89302824-89386602	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	nsv900818	chr13:89302824-89392881	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
6	nsv900819	chr13:89302824-89405660	Active TSS Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
7	nsv900820	chr13:89302824-89686507	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv900821	chr13:89302824-89941209	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
9	nsv471167	chr13:89305650-89393187	Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
10	nsv1045683	chr13:89306589-89347944	Enhancers Weak transcription Flanking Active TSS	lncRNA	n/a	inside rSNPs	diseases
11	esv3451236	chr13:89332000-89354986	Weak transcription Enhancers ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:89344600-89345800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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