Variant report

Variant	rs12855287
Chromosome Location	chr13:30971237-30971238
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr13:30963591..30965165-chr13:30969250..30971365,2	MCF-7	breast:
2	chr13:30968958..30971854-chr13:30981722..30984094,2	MCF-7	breast:
3	chr1:35330757..35333004-chr13:30969945..30972502,2	MCF-7	breast:
4	chr13:30969352..30972567-chr13:31037950..31040897,3	MCF-7	breast:
5	chr13:30970361..30972231-chr13:30975578..30977977,2	MCF-7	breast:
6	chr13:30970632..30975368-chr13:30976139..30980385,5	MCF-7	breast:
7	chr13:30970496..30972876-chr13:31189644..31192499,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000132952	Chromatin interaction
ENSG00000189403	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs12867032	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35052580	0.93[EUR][1000 genomes]
rs35624900	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6490458	0.95[EUR][1000 genomes]
rs6490459	0.98[EUR][1000 genomes]
rs7986129	0.98[EUR][1000 genomes]
rs9508721	0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530602	chr13:30911025-31404272	Strong transcription Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:30970000-30971400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
2	chr13:30970000-30971400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
3	chr13:30970000-30972600	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr13:30970000-30976000	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr13:30970000-30982200	Weak transcription	Esophagus	oesophagus
6	chr13:30970200-30971800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr13:30970200-30972400	Weak transcription	Colonic Mucosa	Colon
8	chr13:30970200-30972400	Weak transcription	Fetal Intestine Large	intestine
9	chr13:30970200-30972400	Weak transcription	Stomach Smooth Muscle	stomach
10	chr13:30970200-30972600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr13:30970200-30972600	Weak transcription	Adipose Nuclei	Adipose
12	chr13:30970200-30972600	Weak transcription	Rectal Mucosa Donor 29	rectum
13	chr13:30970200-30972600	Weak transcription	NHDF-Ad	bronchial
14	chr13:30970200-30973000	Weak transcription	Right Atrium	heart
15	chr13:30970200-30976400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
16	chr13:30970200-30982200	Weak transcription	Psoas Muscle	Psoas
17	chr13:30970600-30972800	Weak transcription	Stomach Mucosa	stomach
18	chr13:30970600-30982200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr13:30970800-30972200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr13:30970800-30972400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
21	chr13:30970800-30972400	Weak transcription	Muscle Satellite Cultured Cells	--
22	chr13:30970800-30972400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
23	chr13:30970800-30972400	Weak transcription	Thymus	Thymus
24	chr13:30970800-30972400	Weak transcription	Osteobl	bone
25	chr13:30970800-30972600	Weak transcription	Duodenum Mucosa	Duodenum
26	chr13:30970800-30972600	Weak transcription	Fetal Intestine Small	intestine
27	chr13:30970800-30972600	Weak transcription	Rectal Mucosa Donor 31	rectum
28	chr13:30970800-30973600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
29	chr13:30970800-30975000	Enhancers	Liver	Liver
30	chr13:30970800-30975200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
31	chr13:30970800-30975400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
32	chr13:30970800-30975400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
33	chr13:30970800-30975800	Weak transcription	H1 Cell Line	embryonic stem cell
34	chr13:30970800-30975800	Weak transcription	HUES6 Cell Line	embryonic stem cell
35	chr13:30970800-30978400	Weak transcription	Fetal Kidney	kidney
36	chr13:30970800-30982000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
37	chr13:30971000-30972400	Weak transcription	Fetal Thymus	thymus
38	chr13:30971000-30972400	Enhancers	HepG2	liver
39	chr13:30971200-30972400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
40	chr13:30971200-30972400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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