Variant report

Variant	rs12859316
Chromosome Location	chrX:110350340-110350341
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chrX:110349889..110351867-chrX:110354398..110356796,2	MCF-7	breast:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532899	chrX:110117241-110419226	Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv428712	chrX:110184832-110358638	Bivalent Enhancer Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	esv3337751	chrX:110217889-110429181	Enhancers Active TSS Bivalent Enhancer Strong transcription Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv869661	chrX:110337762-111084262	Enhancers Transcr. at gene 5' and 3' Weak transcription Genic enhancers Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
5	nsv869737	chrX:110346973-110376790	Active TSS Weak transcription Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:110340000-110351000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chrX:110340000-110353200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chrX:110340000-110374200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chrX:110342400-110357800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chrX:110342800-110358200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chrX:110342800-110362200	Weak transcription	Brain Angular Gyrus	brain
7	chrX:110345600-110357800	Weak transcription	Placenta	Placenta
8	chrX:110345600-110406200	Weak transcription	Brain Germinal Matrix	brain
9	chrX:110346000-110353600	Weak transcription	Pancreatic Islets	Pancreatic Islet
10	chrX:110346400-110351000	Strong transcription	HUES48 Cell Line	embryonic stem cell
11	chrX:110346600-110350600	Strong transcription	iPS-18 Cell Line	embryonic stem cell
12	chrX:110347200-110355000	Weak transcription	Ovary	ovary
13	chrX:110347200-110372400	Weak transcription	Fetal Muscle Trunk	muscle
14	chrX:110347800-110371400	Weak transcription	HMEC	breast
15	chrX:110349400-110351400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
16	chrX:110349600-110351000	Weak transcription	HUES6 Cell Line	embryonic stem cell
17	chrX:110349600-110351200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chrX:110349600-110365800	Weak transcription	NH-A	brain
19	chrX:110349800-110350800	Weak transcription	Pancreas	Pancrea
20	chrX:110349800-110351400	Weak transcription	HUES64 Cell Line	embryonic stem cell
21	chrX:110349800-110355600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
22	chrX:110349800-110358200	Weak transcription	H9 Cell Line	embryonic stem cell
23	chrX:110349800-110371200	Weak transcription	H1 Cell Line	embryonic stem cell
24	chrX:110349800-110375000	Weak transcription	Aorta	Aorta
25	chrX:110350000-110351400	Strong transcription	Fetal Muscle Leg	muscle
26	chrX:110350000-110351800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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