Variant report

Variant	rs12860109
Chromosome Location	chrX:57634578-57634579
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv519013	chrX:57405163-57928734	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	esv2753356	chrX:57526389-58283218	Weak transcription Active TSS Flanking Active TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv522078	chrX:57559581-57928734	Weak transcription Active TSS Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	esv2758570	chrX:57632373-57890408	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	esv2758868	chrX:57632373-57890408	ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:57633400-57634600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chrX:57633600-57634600	Enhancers	H1 Cell Line	embryonic stem cell
3	chrX:57633600-57634800	Active TSS	iPS-15b Cell Line	embryonic stem cell
4	chrX:57633600-57634800	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
5	chrX:57633800-57634600	Active TSS	HSMM	muscle
6	chrX:57633800-57634600	Active TSS	HSMMtube	muscle
7	chrX:57633800-57634800	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
8	chrX:57634000-57634600	Active TSS	ES-WA7 Cell Line	embryonic stem cell
9	chrX:57634000-57634600	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
10	chrX:57634000-57634600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
11	chrX:57634000-57634600	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
12	chrX:57634000-57634600	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chrX:57634000-57634600	Active TSS	Muscle Satellite Cultured Cells	--
14	chrX:57634000-57634600	Active TSS	Stomach Smooth Muscle	stomach
15	chrX:57634000-57634800	Active TSS	iPS-20b Cell Line	embryonic stem cell
16	chrX:57634000-57634800	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chrX:57634200-57634600	Active TSS	Placenta	Placenta
18	chrX:57634200-57634600	Active TSS	Right Ventricle	heart
19	chrX:57634400-57634600	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell
20	chrX:57634400-57634600	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
21	chrX:57634400-57634600	Enhancers	K562	blood
22	chrX:57634400-57634800	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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