Variant report
| Variant | rs12860163 |
|---|---|
| Chromosome Location | chr13:62933170-62933171 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:37)
| rs_ID | r2[population] |
|---|---|
| rs12428082 | 0.83[AMR][1000 genomes];0.80[EUR][1000 genomes] |
| rs12428375 | 0.80[EUR][1000 genomes] |
| rs12429317 | 0.80[EUR][1000 genomes] |
| rs12429390 | 0.80[EUR][1000 genomes] |
| rs12429397 | 0.80[EUR][1000 genomes] |
| rs12429424 | 0.80[EUR][1000 genomes] |
| rs12431026 | 0.80[EUR][1000 genomes] |
| rs12431035 | 0.80[EUR][1000 genomes] |
| rs12431064 | 0.80[EUR][1000 genomes] |
| rs12870231 | 0.80[EUR][1000 genomes] |
| rs12870826 | 0.84[EUR][1000 genomes] |
| rs12871366 | 0.80[EUR][1000 genomes] |
| rs12871694 | 0.80[EUR][1000 genomes] |
| rs12872004 | 0.80[EUR][1000 genomes] |
| rs12875690 | 1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs12875940 | 0.80[EUR][1000 genomes] |
| rs12876207 | 0.80[EUR][1000 genomes] |
| rs12876343 | 0.84[EUR][1000 genomes] |
| rs12876465 | 0.80[EUR][1000 genomes] |
| rs12876620 | 1.00[AFR][1000 genomes] |
| rs12876700 | 0.80[EUR][1000 genomes] |
| rs12876997 | 0.80[EUR][1000 genomes] |
| rs12877105 | 0.80[EUR][1000 genomes] |
| rs12877223 | 0.80[EUR][1000 genomes] |
| rs12877330 | 0.80[EUR][1000 genomes] |
| rs17061308 | 0.80[EUR][1000 genomes] |
| rs17298039 | 0.80[EUR][1000 genomes] |
| rs4438182 | 0.80[EUR][1000 genomes] |
| rs4883682 | 0.80[EUR][1000 genomes] |
| rs4884420 | 0.80[EUR][1000 genomes] |
| rs4884421 | 0.80[EUR][1000 genomes] |
| rs4884422 | 0.80[EUR][1000 genomes] |
| rs4884423 | 0.80[EUR][1000 genomes] |
| rs71439933 | 0.80[EUR][1000 genomes] |
| rs71439935 | 0.80[EUR][1000 genomes] |
| rs71439947 | 1.00[AFR][1000 genomes] |
| rs71439948 | 1.00[AFR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv948810 | chr13:62003256-62968196 | Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 11 gene(s) | inside rSNPs | diseases |
| 2 | nsv1038992 | chr13:62827929-63369497 | Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 3 | nsv541795 | chr13:62827929-63369497 | Active TSS Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 4 | nsv1038215 | chr13:62836702-63405446 | ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 5 | nsv900258 | chr13:62885877-62958890 | Enhancers Weak transcription Flanking Active TSS Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | n/a |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr13:62932400-62934800 | Weak transcription | HUES48 Cell Line | embryonic stem cell |
