Variant report

Variant	rs12860176
Chromosome Location	chr13:47740356-47740357
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11843104	0.92[ASN][1000 genomes]
rs12855036	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12876283	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12876339	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17069594	1.00[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs17069598	0.83[ASN][1000 genomes]
rs28853421	0.85[EUR][1000 genomes]
rs34992840	1.00[ASN][1000 genomes]
rs35091833	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61951579	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs61952819	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6561355	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71432947	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs71432948	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2763019	chr13:47348229-48123447	Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	esv3394678	chr13:47678184-48039379	Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv832599	chr13:47703075-47873855	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:47734200-47742200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr13:47739000-47742600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr13:47740200-47743000	Enhancers	Fetal Lung	lung
4	chr13:47740200-47745000	Weak transcription	Fetal Stomach	stomach

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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