Variant report

Variant	rs12861479
Chromosome Location	chr13:51699759-51699760
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr13:51694862..51696683-chr13:51697397..51699887,2	MCF-7	breast:
2	chr13:51699608..51700542-chr13:51860268..51861161,4	K562	blood:
3	chr13:51698016..51700737-chr13:51726914..51729156,2	K562	blood:
4	chr13:51699580..51700109-chr13:51722979..51723590,2	MCF-7	breast:
5	chr13:51699716..51700497-chr13:51860213..51860971,2	MCF-7	breast:

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11148209	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11843310	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12583146	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12584035	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12585073	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12585759	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12585760	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12855038	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12864781	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12865375	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12866404	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12869148	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12869206	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12870410	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12873258	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12876979	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12877424	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7320501	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7320544	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7333415	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7998926	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832610	chr13:51636661-51822106	Bivalent/Poised TSS Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:51693200-51700800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr13:51696600-51700200	Enhancers	Liver	Liver
3	chr13:51696800-51700000	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr13:51696800-51700400	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr13:51697000-51700000	Enhancers	iPS-20b Cell Line	embryonic stem cell
6	chr13:51697000-51700400	Enhancers	H1 Cell Line	embryonic stem cell
7	chr13:51697000-51700400	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr13:51697000-51700400	Enhancers	HUES6 Cell Line	embryonic stem cell
9	chr13:51697200-51700400	Enhancers	ES-I3 Cell Line	embryonic stem cell
10	chr13:51697800-51699800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr13:51698800-51699800	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr13:51698800-51699800	Weak transcription	HUES64 Cell Line	embryonic stem cell
13	chr13:51699200-51700000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr13:51699600-51699800	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr13:51699600-51700000	Weak transcription	Spleen	Spleen
16	chr13:51699600-51700000	Bivalent Enhancer	HepG2	liver
17	chr13:51699600-51700400	Enhancers	Primary B cells from peripheral blood	blood
18	chr13:51699600-51703000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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