Variant report

Variant	rs12865401
Chromosome Location	chr13:29750943-29750944
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs11147367	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11147371	0.90[CHB][hapmap];0.93[JPT][hapmap];1.00[YRI][hapmap];0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11617349	0.86[CHB][hapmap];0.93[JPT][hapmap];0.95[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11617704	0.95[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11617962	0.94[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11618881	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11619729	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12586107	0.90[CHB][hapmap];0.93[JPT][hapmap];0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12858732	0.95[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12863498	0.90[CHB][hapmap];0.93[JPT][hapmap];1.00[YRI][hapmap]
rs12866752	0.95[CHB][hapmap];1.00[JPT][hapmap];0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12868391	0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12877143	0.94[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2104658	0.95[CHB][hapmap];0.94[JPT][hapmap];0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs34231979	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs34642107	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs35117092	0.95[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs35248184	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs35251425	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35852257	0.95[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs73166467	0.95[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73166469	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73166476	0.82[ASN][1000 genomes]
rs7328324	0.93[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs914261	0.81[CEU][hapmap];0.91[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:21 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533835	chr13:29141132-29962069	Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	esv3406145	chr13:29616606-29917459	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv899957	chr13:29720732-29820422	Weak transcription Genic enhancers ZNF genes & repeats Enhancers Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv427927	chr13:29729315-30062054	Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	esv3495579	chr13:29750102-29752700	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
6	esv3495580	chr13:29750199-29751416	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
7	esv3404529	chr13:29750690-29751818	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
8	esv3495582	chr13:29750721-29751416	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
9	esv3495581	chr13:29750721-29751640	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
10	esv3503034	chr13:29750732-29751724	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
11	esv3503035	chr13:29750739-29751771	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
12	esv3508319	chr13:29750744-29751758	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
13	esv3508308	chr13:29750755-29751707	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
14	esv3508297	chr13:29750760-29751715	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
15	esv3503033	chr13:29750760-29751732	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
16	esv3503032	chr13:29750772-29751731	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
17	esv3508330	chr13:29750817-29751686	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
18	esv3503031	chr13:29750827-29751686	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
19	esv3503036	chr13:29750831-29751684	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
20	esv3508341	chr13:29750831-29751684	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
21	esv20967	chr13:29750941-29751706	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:29734400-29752600	Weak transcription	Aorta	Aorta
2	chr13:29745600-29752400	Weak transcription	Fetal Heart	heart
3	chr13:29750000-29751000	Weak transcription	Dnd41	blood

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