Variant report

Variant	rs12866187
Chromosome Location	chr13:110350938-110350939
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:110344285..110347101-chr13:110349065..110351495,2	K562	blood:
2	chr13:110350767..110352519-chr13:110358277..110361113,2	MCF-7	breast:

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs35906168	0.81[EUR][1000 genomes]
rs754730	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051686	chr13:110283468-110362954	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1044855	chr13:110301572-110408608	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:110341000-110352000	Weak transcription	Fetal Intestine Small	intestine
2	chr13:110342200-110351200	Strong transcription	Dnd41	blood
3	chr13:110344200-110351800	Weak transcription	Colonic Mucosa	Colon
4	chr13:110347600-110356800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr13:110347800-110352000	Weak transcription	Stomach Mucosa	stomach
6	chr13:110349000-110353000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr13:110349000-110353800	Enhancers	Primary hematopoietic stem cells short term culture	blood
8	chr13:110349400-110351600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
9	chr13:110349600-110354000	Enhancers	Primary hematopoietic stem cells	blood
10	chr13:110349800-110351800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr13:110349800-110353000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr13:110349800-110353200	Enhancers	K562	blood
13	chr13:110350000-110353000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr13:110350200-110353000	Enhancers	HSMM	muscle
15	chr13:110350200-110353600	Enhancers	Primary monocytes fromperipheralblood	blood
16	chr13:110350200-110353600	Enhancers	Monocytes-CD14+_RO01746	blood
17	chr13:110350400-110351600	Weak transcription	Small Intestine	intestine
18	chr13:110350400-110353000	Enhancers	Primary neutrophils fromperipheralblood	blood
19	chr13:110350600-110351200	Weak transcription	Adipose Nuclei	Adipose
20	chr13:110350600-110351600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr13:110350600-110351800	Weak transcription	Left Ventricle	heart
22	chr13:110350600-110351800	Weak transcription	Sigmoid Colon	Sigmoid Colon
23	chr13:110350600-110353000	Enhancers	Muscle Satellite Cultured Cells	--
24	chr13:110350800-110351800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr13:110350800-110352000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr13:110350800-110352200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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