Variant report

Variant	rs12868112
Chromosome Location	chr13:62244678-62244679
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10507672	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10507673	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11616619	0.82[ASN][1000 genomes]
rs11617966	0.93[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs11618197	0.84[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs11618840	0.93[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs12583182	0.93[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs12583397	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12584815	0.93[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs12585168	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12864912	0.90[ASN][1000 genomes]
rs12868360	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12868573	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12870568	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12870813	0.84[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs12873399	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1417464	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17060246	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1934849	0.83[ASN][1000 genomes]
rs2487339	0.86[ASN][1000 genomes]
rs34157221	0.93[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs34266436	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34289387	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34472182	0.93[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs34486297	0.81[ASN][1000 genomes]
rs34572426	0.93[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs34580180	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34690958	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34768890	0.80[ASN][1000 genomes]
rs35278423	0.93[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs35990992	0.87[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs36115037	0.80[ASN][1000 genomes]
rs4884390	0.93[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs4886368	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs59756022	0.81[ASN][1000 genomes]
rs61953379	0.93[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs67276133	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73217927	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761266	chr13:61928642-62690828	Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv948810	chr13:62003256-62968196	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv1053698	chr13:62108064-62271909	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv900250	chr13:62147535-62321073	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:62239800-62247000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr13:62241400-62245600	Weak transcription	HepG2	liver

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