Variant report

Variant	rs12868726
Chromosome Location	chr13:96185101-96185102
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs1033953	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11839820	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11840079	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11840119	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12853585	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12853600	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12858942	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12865002	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12866182	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12868251	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12868940	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12876487	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12877076	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1318817	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs16880	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2148046	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2148047	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2389313	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2892733	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs34238981	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34451357	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs34472875	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs34485920	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34743079	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs34907341	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35107945	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35118150	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35139994	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35201733	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35227895	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35376529	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35442761	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35458901	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35509467	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35521009	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs35556246	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35679876	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35750325	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs35859073	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35921212	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs36034774	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4344600	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4375536	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4448802	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4509883	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4558269	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4635199	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs71433025	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71433026	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71433087	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71433088	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7334779	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7336459	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7336934	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7993626	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs9524997	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9525002	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9561891	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs971305	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs971306	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv900933	chr13:96138087-96215289	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS Weak transcription Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv525760	chr13:96176034-96186575	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	esv3382990	chr13:96185012-96185533	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:96181200-96185800	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr13:96182400-96185200	Enhancers	A549	lung
3	chr13:96182600-96186400	Weak transcription	NH-A	brain
4	chr13:96182600-96187600	Weak transcription	HSMMtube	muscle
5	chr13:96182800-96185800	Weak transcription	HepG2	liver
6	chr13:96182800-96186000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr13:96183000-96185800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr13:96183000-96186000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr13:96183000-96186200	Weak transcription	Muscle Satellite Cultured Cells	--
10	chr13:96183000-96187000	Weak transcription	HMEC	breast
11	chr13:96183000-96187200	Weak transcription	Hela-S3	cervix
12	chr13:96183000-96187400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr13:96183000-96188800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
14	chr13:96183000-96192800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr13:96183200-96185800	Weak transcription	HUVEC	blood vessel
16	chr13:96183400-96185800	Weak transcription	Pancreas	Pancrea
17	chr13:96183600-96187200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr13:96184200-96187200	Weak transcription	NHDF-Ad	bronchial
19	chr13:96184600-96186000	Weak transcription	Osteobl	bone
20	chr13:96184800-96186000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
21	chr13:96185000-96185600	Weak transcription	Fetal Kidney	kidney
22	chr13:96185000-96186000	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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