Variant report

Variant	rs12868749
Chromosome Location	chr13:97729753-97729754
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs12877462	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16951495	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16953836	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16953840	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16953842	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16953846	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71434529	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9584494	0.83[EUR][1000 genomes]
rs992707	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832693	chr13:97594845-97777481	Bivalent/Poised TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:97729200-97729800	Active TSS	Primary hematopoietic stem cells	blood
2	chr13:97729200-97729800	Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr13:97729200-97729800	Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr13:97729200-97730000	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
5	chr13:97729400-97729800	Active TSS	Primary B cells from cord blood	blood
6	chr13:97729600-97729800	Enhancers	Primary hematopoietic stem cells short term culture	blood
7	chr13:97729600-97729800	Active TSS	Monocytes-CD14+_RO01746	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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