Variant report
| Variant | rs12870321 |
|---|---|
| Chromosome Location | chr13:29728746-29728747 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr13:29727502..29729251-chr13:29732953..29735104,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:20)
| rs_ID | r2[population] |
|---|---|
| rs11147371 | 0.82[TSI][hapmap] |
| rs11617186 | 1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11617349 | 0.82[TSI][hapmap] |
| rs11617704 | 0.82[TSI][hapmap] |
| rs11617962 | 0.80[CHD][hapmap];0.82[TSI][hapmap] |
| rs11620394 | 0.81[CEU][hapmap];0.86[CHB][hapmap];0.94[JPT][hapmap];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs12863498 | 0.82[TSI][hapmap] |
| rs12864718 | 0.84[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs12866752 | 0.82[TSI][hapmap] |
| rs12872060 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs12873910 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17573873 | 1.00[ASW][hapmap] |
| rs17653330 | 1.00[ASW][hapmap] |
| rs34399838 | 0.86[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs34503294 | 0.88[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs4325398 | 0.88[AFR][1000 genomes] |
| rs67879516 | 0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs7336150 | 0.87[TSI][hapmap] |
| rs7997763 | 0.83[JPT][hapmap] |
| rs9508304 | 0.83[JPT][hapmap] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv533835 | chr13:29141132-29962069 | Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 28 gene(s) | inside rSNPs | diseases |
| 2 | esv3406145 | chr13:29616606-29917459 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
| 3 | nsv899957 | chr13:29720732-29820422 | Weak transcription Genic enhancers ZNF genes & repeats Enhancers Flanking Active TSS Active TSS | TF binding regionChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 4 | nsv455851 | chr13:29728058-29746494 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 5 | nsv561391 | chr13:29728058-29746494 | Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr13:29727200-29734200 | Weak transcription | Dnd41 | blood |
| 2 | chr13:29727800-29729000 | Enhancers | Fetal Heart | heart |
