Variant report
| Variant | rs12873465 |
|---|---|
| Chromosome Location | chr13:65099205-65099206 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
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| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr13:65092784..65094622-chr13:65098133..65100650,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:9)
| rs_ID | r2[population] |
|---|---|
| rs12584291 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1572453 | 0.90[EUR][1000 genomes] |
| rs4884580 | 0.94[EUR][1000 genomes] |
| rs67144067 | 0.87[EUR][1000 genomes] |
| rs7981940 | 0.81[EUR][1000 genomes] |
| rs7989607 | 0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs9528776 | 0.93[ASN][1000 genomes] |
| rs9540136 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs9564179 | 0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page:
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| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv455914 | chr13:64432922-65368490 | Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 2 | nsv561965 | chr13:64432922-65368490 | Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 3 | esv3367739 | chr13:64805577-65549276 | Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 4 | nsv900344 | chr13:64868768-65193124 | Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 5 | nsv900346 | chr13:64999866-65198145 | Enhancers Weak transcription Active TSS ZNF genes & repeats | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 6 | nsv428606 | chr13:65008453-65158452 | Enhancers Weak transcription ZNF genes & repeats Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 7 | nsv900347 | chr13:65018193-65103190 | Enhancers Weak transcription ZNF genes & repeats Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 8 | esv2756123 | chr13:65057812-65113646 | Weak transcription ZNF genes & repeats Enhancers Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 9 | nsv900348 | chr13:65074137-65193124 | Enhancers Weak transcription ZNF genes & repeats Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr13:65097400-65107600 | Weak transcription | ES-UCSF4 Cell Line | embryonic stem cell |
| 2 | chr13:65098200-65102600 | Weak transcription | HUES64 Cell Line | embryonic stem cell |
