Variant report

Variant	rs12873569
Chromosome Location	chr13:89572192-89572193
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs1001151	0.82[EUR][1000 genomes]
rs1159222	0.86[EUR][1000 genomes]
rs1411561	0.93[EUR][1000 genomes]
rs1819591	0.81[EUR][1000 genomes]
rs2050585	0.82[EUR][1000 genomes]
rs2150169	0.86[EUR][1000 genomes]
rs2347984	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2348216	0.92[EUR][1000 genomes]
rs3864989	0.97[EUR][1000 genomes]
rs3930555	0.82[EUR][1000 genomes]
rs4628820	0.98[EUR][1000 genomes]
rs4771774	0.94[EUR][1000 genomes]
rs4773423	0.94[EUR][1000 genomes]
rs4773424	0.94[EUR][1000 genomes]
rs7323385	0.92[EUR][1000 genomes]
rs7338742	0.86[EUR][1000 genomes]
rs9515492	0.82[EUR][1000 genomes]
rs9515499	0.94[EUR][1000 genomes]
rs9515519	0.86[EUR][1000 genomes]
rs9522385	0.83[EUR][1000 genomes]
rs9522396	0.97[EUR][1000 genomes]
rs9560189	0.87[EUR][1000 genomes]
rs9560199	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:19 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv900820	chr13:89302824-89686507	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv900821	chr13:89302824-89941209	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv915862	chr13:89408920-90118030	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	esv2758339	chr13:89411081-89875974	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	esv2759957	chr13:89411081-89875974	ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv900825	chr13:89463589-89574219	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv900826	chr13:89466123-89686507	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv900828	chr13:89474702-89642526	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	nsv915623	chr13:89476229-89668705	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
10	nsv900831	chr13:89477369-89610815	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
11	nsv826739	chr13:89477707-89830601	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
12	nsv900835	chr13:89502819-89610815	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
13	nsv900839	chr13:89510330-89637081	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
14	esv34578	chr13:89515664-89822799	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
15	nsv900840	chr13:89516104-89686507	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
16	nsv900841	chr13:89523570-89622192	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
17	nsv1043687	chr13:89523570-89673179	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
18	nsv900842	chr13:89529847-89622192	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
19	esv2757546	chr13:89539415-89864593	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:89571400-89573000	Enhancers	Primary B cells from peripheral blood	blood
2	chr13:89571600-89572400	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
3	chr13:89571600-89572400	Flanking Active TSS	Dnd41	blood
4	chr13:89571600-89572400	Enhancers	Monocytes-CD14+_RO01746	blood
5	chr13:89571600-89572800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr13:89571600-89573200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr13:89571800-89572400	Enhancers	Primary B cells from cord blood	blood
8	chr13:89571800-89572400	Enhancers	Primary T helper cells PMA-I stimulated	--
9	chr13:89571800-89572600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
10	chr13:89571800-89573000	Enhancers	Primary hematopoietic stem cells	blood
11	chr13:89571800-89573000	Enhancers	Primary T helper cells fromperipheralblood	blood
12	chr13:89572000-89572600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
13	chr13:89572000-89572800	Enhancers	Primary monocytes fromperipheralblood	blood
14	chr13:89572000-89572800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
15	chr13:89572000-89572800	Enhancers	Primary T killer memory cells from peripheral blood	blood
16	chr13:89572000-89573000	Enhancers	Primary T cells from cord blood	blood

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