Variant report

Variant	rs12874582
Chromosome Location	chr13:52421450-52421451
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr13:52419819..52421684-chr13:52438948..52441097,2	MCF-7	breast:
2	chr13:52026319..52027835-chr13:52419414..52421955,2	K562	blood:
3	chr13:52405263..52408313-chr13:52419489..52422103,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000102786	Chromatin interaction
ENSG00000236778	Chromatin interaction

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs17076052	1.00[ASN][1000 genomes]
rs1924614	1.00[ASN][1000 genomes]
rs1924615	1.00[ASN][1000 genomes]
rs1924618	1.00[ASN][1000 genomes]
rs2408530	1.00[ASN][1000 genomes]
rs28429889	1.00[ASN][1000 genomes]
rs28485335	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34507703	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34595679	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35382547	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35738901	0.91[EUR][1000 genomes]
rs35824984	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4605048	1.00[ASN][1000 genomes]
rs549831	1.00[ASN][1000 genomes]
rs575555	1.00[ASN][1000 genomes]
rs577331	1.00[ASN][1000 genomes]
rs578134	1.00[ASN][1000 genomes]
rs579839	1.00[ASN][1000 genomes]
rs58050745	1.00[ASN][1000 genomes]
rs58919798	1.00[ASN][1000 genomes]
rs61957362	1.00[ASN][1000 genomes]
rs61957363	1.00[ASN][1000 genomes]
rs61957365	1.00[ASN][1000 genomes]
rs61957367	1.00[ASN][1000 genomes]
rs61957391	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61957414	1.00[ASN][1000 genomes]
rs7323551	1.00[ASN][1000 genomes]
rs7333241	1.00[ASN][1000 genomes]
rs7336182	1.00[ASN][1000 genomes]
rs7338168	1.00[ASN][1000 genomes]
rs932912	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530718	chr13:52291802-52832752	Enhancers ZNF genes & repeats Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	nsv933424	chr13:52293482-52507732	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
3	nsv1044310	chr13:52321564-52643924	Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
4	nsv1050117	chr13:52325116-52643924	Enhancers Genic enhancers Flanking Active TSS Strong transcription Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
5	nsv934070	chr13:52362588-53174923	Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Active TSS Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	59 gene(s)	inside rSNPs	diseases
6	nsv900081	chr13:52406404-52426096	Bivalent Enhancer Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:52419400-52422600	Weak transcription	NHDF-Ad	bronchial
2	chr13:52419600-52422600	Weak transcription	NH-A	brain
3	chr13:52419600-52423400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr13:52419600-52423600	Weak transcription	Primary monocytes fromperipheralblood	blood
5	chr13:52419600-52423600	Weak transcription	Ovary	ovary
6	chr13:52419600-52423600	Weak transcription	Monocytes-CD14+_RO01746	blood
7	chr13:52419600-52423800	Weak transcription	Spleen	Spleen
8	chr13:52419600-52425800	Weak transcription	Right Atrium	heart
9	chr13:52419600-52426600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr13:52419800-52422600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr13:52419800-52422800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr13:52419800-52422800	Weak transcription	HUVEC	blood vessel
13	chr13:52419800-52422800	Weak transcription	Osteobl	bone
14	chr13:52420000-52423200	Weak transcription	Fetal Heart	heart
15	chr13:52420000-52432600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
16	chr13:52420200-52423400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr13:52420400-52422400	Weak transcription	HepG2	liver
18	chr13:52420400-52422800	Weak transcription	Placenta	Placenta
19	chr13:52420600-52423200	Weak transcription	Primary neutrophils fromperipheralblood	blood

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