Variant report

Variant	rs1288076
Chromosome Location	chr6:119775747-119775748
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:4)
LncRNA
region (count:3)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:4 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:119774448..119776826-chr6:119788102..119790606,2	MCF-7	breast:
2	chr6:119775117..119777566-chr6:119786329..119787981,2	K562	blood:
3	chr6:119773729..119776617-chr6:119785441..119787829,2	K562	blood:
4	chr6:119770080..119773062-chr6:119774639..119776880,2	K562	blood:

(count:3 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-MAN1A1-1	chr6:119773712-119776358	ENSG00000249211
2	lnc-MAN1A1-1	chr6:119774358-119776358	XLOC_005819
3	lnc-MAN1A1-1	chr6:119773712-119776358	NONHSAT114717

No data

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs1288087	0.90[AFR][1000 genomes]
rs4946429	0.82[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3447598	chr6:119558591-120119384	Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
2	esv3389526	chr6:119558598-120190087	ZNF genes & repeats Enhancers Weak transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
3	nsv1027904	chr6:119709488-120001986	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Strong transcription	Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv533518	chr6:119712186-119998618	ZNF genes & repeats Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription	Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	esv3442553	chr6:119742069-120076777	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription	Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:119768200-119780400	Weak transcription	Aorta	Aorta
2	chr6:119770600-119776000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr6:119770800-119780000	Weak transcription	Gastric	stomach
4	chr6:119771400-119780000	Weak transcription	Duodenum Mucosa	Duodenum
5	chr6:119774000-119775800	Enhancers	Cortex derived primary cultured neurospheres	brain
6	chr6:119774400-119776200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr6:119774600-119777400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr6:119774800-119776200	Enhancers	Fetal Heart	heart
9	chr6:119774800-119776200	Enhancers	Pancreatic Islets	Pancreatic Islet
10	chr6:119774800-119776400	Enhancers	Colon Smooth Muscle	Colon
11	chr6:119774800-119779400	Weak transcription	Spleen	Spleen
12	chr6:119775000-119777200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr6:119775400-119775800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr6:119775600-119776000	Enhancers	Brain Anterior Caudate	brain
15	chr6:119775600-119776200	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr6:119775600-119776400	Enhancers	Monocytes-CD14+_RO01746	blood
17	chr6:119775600-119776600	Enhancers	Primary monocytes fromperipheralblood	blood
18	chr6:119775600-119776600	Enhancers	Brain Inferior Temporal Lobe	brain
19	chr6:119775600-119776800	Enhancers	Primary hematopoietic stem cells	blood
20	chr6:119775600-119777000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr6:119775600-119777200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr6:119775600-119777800	Enhancers	Adipose Nuclei	Adipose

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