Variant report

Variant	rs12881161
Chromosome Location	chr14:31005035-31005036
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11624235	0.81[AMR][1000 genomes]
rs11626600	1.00[CEU][hapmap];0.87[CHB][hapmap];0.87[JPT][hapmap];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11846071	0.95[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12894186	0.80[AMR][1000 genomes]
rs1840399	0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs229168	0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs229175	0.95[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs229244	0.89[CEU][hapmap]
rs2378780	0.94[CEU][hapmap]
rs28567474	0.84[EUR][1000 genomes]
rs447853	0.89[CEU][hapmap]
rs55725270	0.83[AMR][1000 genomes]
rs7141333	0.95[CEU][hapmap];0.80[EUR][1000 genomes]
rs7141624	0.80[AMR][1000 genomes]
rs7156431	0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8015536	0.95[CEU][hapmap]
rs8018993	0.81[EUR][1000 genomes]
rs8020220	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9322864	0.89[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv564169	chr14:30819087-31541494	Strong transcription Genic enhancers ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv1036419	chr14:30969616-31224226	Weak transcription Strong transcription Active TSS Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	nsv901581	chr14:30978745-31585289	Strong transcription Weak transcription Enhancers Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:31002400-31020800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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