Variant report

Variant	rs12884664
Chromosome Location	chr14:79041352-79041353
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs17107873	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap]
rs34792447	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34842635	0.80[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs34905855	0.85[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs34949059	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs35486827	0.80[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs35736804	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7155847	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2760000	chr14:78875607-79173528	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	esv2758363	chr14:78903610-79173528	Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:79040600-79042200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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