Variant report

Variant	rs12885872
Chromosome Location	chr14:42893534-42893535
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 66 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs12879582	0.85[EUR][1000 genomes]
rs12880643	0.93[EUR][1000 genomes]
rs12881673	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12887070	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12889329	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12889499	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12892109	0.85[EUR][1000 genomes]
rs12892684	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12893355	0.85[EUR][1000 genomes]
rs12893585	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12893854	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12897229	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12897892	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12898123	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17113142	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17113149	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs34278120	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs34342103	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs34348196	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34478599	0.85[EUR][1000 genomes]
rs34629550	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs34723312	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs34999317	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs35210813	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs35244119	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs35273778	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs35353177	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs35485657	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs35657116	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs35807748	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs36010046	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs66517579	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs66813626	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs67108906	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs67236782	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs67750234	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs68016149	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71411642	1.00[AMR][1000 genomes]
rs71411644	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7161465	0.85[EUR][1000 genomes]
rs72680469	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:25 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv901742	chr14:42584172-43061497	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1045255	chr14:42653021-43167389	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv542059	chr14:42653021-43167389	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv901743	chr14:42672410-43030843	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv1036016	chr14:42686650-42922136	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv1049689	chr14:42686650-42943116	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	nsv1051814	chr14:42717053-43100892	Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
8	nsv901749	chr14:42724237-42919967	Enhancers Bivalent/Poised TSS ZNF genes & repeats Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
9	nsv564566	chr14:42823557-42911816	Enhancers Weak transcription Bivalent/Poised TSS ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
10	nsv564567	chr14:42837497-42961305	Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
11	nsv901750	chr14:42843039-42971788	Bivalent/Poised TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
12	esv2757564	chr14:42850654-42974696	Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
13	esv2759984	chr14:42850654-43008829	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
14	nsv521740	chr14:42854423-42910684	Enhancers Weak transcription Active TSS Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
15	nsv564568	chr14:42854423-42910684	Enhancers Weak transcription Active TSS Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
16	nsv1048117	chr14:42856976-43023571	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
17	esv2758354	chr14:42863795-43008829	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
18	esv2763067	chr14:42864428-42894766	Bivalent/Poised TSS Enhancers Active TSS Weak transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
19	nsv901751	chr14:42866223-42966008	Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
20	nsv901752	chr14:42866223-42971788	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
21	nsv442337	chr14:42867187-42960651	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
22	esv34833	chr14:42870963-42952536	Weak transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
23	esv34406	chr14:42870963-42952550	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
24	nsv1044315	chr14:42875390-43007513	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
25	nsv1042414	chr14:42884353-43154606	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:42891600-42898000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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