Variant report

Variant	rs12886925
Chromosome Location	chr14:21187471-21187472
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10133492	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11156634	0.93[ASN][1000 genomes]
rs11156636	0.94[ASN][1000 genomes]
rs11628398	0.94[ASN][1000 genomes]
rs12433896	0.93[ASN][1000 genomes]
rs2002078	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4982346	0.94[ASN][1000 genomes]
rs6571358	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6571359	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7151941	0.93[ASN][1000 genomes]
rs7160404	0.99[ASN][1000 genomes]
rs8003799	0.93[ASN][1000 genomes]
rs8003813	0.93[ASN][1000 genomes]
rs8007797	0.93[ASN][1000 genomes]
rs8008116	0.93[ASN][1000 genomes]
rs8010034	0.94[ASN][1000 genomes]
rs8011651	0.93[ASN][1000 genomes]
rs8012051	0.93[ASN][1000 genomes]
rs8015364	0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043923	chr14:20338742-21336425	Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	203 gene(s)	inside rSNPs	diseases
2	nsv541970	chr14:20338742-21336425	Strong transcription Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	203 gene(s)	inside rSNPs	diseases
3	esv21015	chr14:20800765-21257878	Active TSS Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	173 gene(s)	inside rSNPs	diseases
4	nsv1051489	chr14:21026592-21214763	Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases
5	nsv1045505	chr14:21168839-21337972	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
6	esv3346394	chr14:21183732-21194448	Flanking Bivalent TSS/Enh Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:21168000-21194600	Weak transcription	Gastric	stomach
2	chr14:21176400-21187600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr14:21183200-21187600	Weak transcription	Duodenum Mucosa	Duodenum
4	chr14:21183400-21187600	Weak transcription	Pancreas	Pancrea
5	chr14:21184600-21188600	Enhancers	Primary B cells from cord blood	blood
6	chr14:21185800-21187600	Weak transcription	Primary B cells from peripheral blood	blood
7	chr14:21186600-21188600	Enhancers	Fetal Intestine Small	intestine
8	chr14:21186600-21189200	Enhancers	Fetal Intestine Large	intestine
9	chr14:21186600-21189200	Enhancers	Stomach Mucosa	stomach
10	chr14:21186800-21188400	Enhancers	Sigmoid Colon	Sigmoid Colon
11	chr14:21186800-21189200	Enhancers	Rectal Mucosa Donor 31	rectum
12	chr14:21187000-21187600	Enhancers	Rectal Mucosa Donor 29	rectum
13	chr14:21187400-21188600	Enhancers	Placenta Amnion	Placenta Amnion

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links