Variant report

Variant	rs12887103
Chromosome Location	chr14:81539214-81539215
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs11159490	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2284735	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052999	chr14:81468860-81599074	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
2	nsv542144	chr14:81468860-81599074	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
3	esv3366384	chr14:81538947-81539479	Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	n/a
4	esv3530307	chr14:81538949-81539490	ZNF genes & repeats Weak transcription	n/a	n/a	inside rSNPs	n/a
5	esv3492933	chr14:81538966-81539443	ZNF genes & repeats Weak transcription	n/a	n/a	inside rSNPs	n/a
6	esv3492934	chr14:81538966-81539443	Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	n/a
7	esv3530306	chr14:81539024-81539431	Weak transcription	n/a	n/a	inside rSNPs	n/a
8	esv3530308	chr14:81539096-81539388	Weak transcription	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:81522600-81545600	Weak transcription	Thymus	Thymus
2	chr14:81537000-81554200	Weak transcription	Fetal Thymus	thymus
3	chr14:81538200-81593000	Weak transcription	Psoas Muscle	Psoas
4	chr14:81539000-81539800	Weak transcription	Liver	Liver
5	chr14:81539000-81541000	Weak transcription	Dnd41	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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