Variant report

Variant	rs12889250
Chromosome Location	chr14:85690760-85690761
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs12431900	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12432159	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1617880	0.85[ASN][1000 genomes]
rs67848924	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2751288	chr14:84815330-85704047	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	esv3401331	chr14:85332747-85716351	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv832846	chr14:85517736-85715650	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	esv3381198	chr14:85690248-85709087	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region lncRNA	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:85687200-85690800	Enhancers	iPS-15b Cell Line	embryonic stem cell
2	chr14:85687800-85690800	Enhancers	HUES64 Cell Line	embryonic stem cell
3	chr14:85687800-85691000	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr14:85688000-85691000	Enhancers	ES-I3 Cell Line	embryonic stem cell
5	chr14:85688000-85691200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
6	chr14:85688200-85690800	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr14:85688400-85691400	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr14:85690000-85690800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr14:85690000-85691000	Enhancers	iPS-20b Cell Line	embryonic stem cell
10	chr14:85690200-85690800	Enhancers	H9 Cell Line	embryonic stem cell
11	chr14:85690200-85691200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
12	chr14:85690200-85691200	Enhancers	Fetal Lung	lung
13	chr14:85690600-85690800	Weak transcription	H1 Cell Line	embryonic stem cell
14	chr14:85690600-85691000	Enhancers	Fetal Stomach	stomach

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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