Variant report

Variant	rs12889565
Chromosome Location	chr14:81937188-81937189
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:81687030..81688910-chr14:81936785..81938652,2	K562	blood:
2	chr14:81683880..81685720-chr14:81936272..81938453,2	MCF-7	breast:
3	chr14:81635413..81637417-chr14:81936503..81938972,2	MCF-7	breast:
4	chr14:81685347..81688369-chr14:81935102..81938034,4	MCF-7	breast:
5	chr14:81683547..81687186-chr14:81935321..81938414,4	K562	blood:
6	chr14:81686241..81687929-chr14:81934706..81937617,2	MCF-7	breast:
7	chr14:81930682..81933078-chr14:81935516..81938233,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000165417	Chromatin interaction
ENSG00000258999	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11159502	0.82[ASN][1000 genomes]
rs11847098	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs12890754	0.81[ASN][1000 genomes]
rs12893669	0.80[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs12896918	0.80[AMR][1000 genomes]
rs1951605	0.82[AMR][1000 genomes]
rs2025214	0.81[ASN][1000 genomes]
rs28455614	0.87[AMR][1000 genomes]
rs4584759	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4903983	0.81[ASN][1000 genomes]
rs4903984	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7150676	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1047694	chr14:81831147-82534026	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv542145	chr14:81831147-82534026	Weak transcription Active TSS Genic enhancers Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:104 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:81926200-81942400	Weak transcription	Spleen	Spleen
2	chr14:81930800-81942400	Weak transcription	Lung	lung
3	chr14:81931400-81938000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr14:81931400-81938200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr14:81931400-81938200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr14:81931400-81938200	Weak transcription	Liver	Liver
7	chr14:81931400-81938400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr14:81931400-81938400	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr14:81931400-81938400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr14:81931400-81938400	Weak transcription	Primary neutrophils fromperipheralblood	blood
11	chr14:81931400-81938400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr14:81931400-81938400	Weak transcription	Duodenum Mucosa	Duodenum
13	chr14:81931400-81938400	Weak transcription	Fetal Lung	lung
14	chr14:81931400-81938400	Weak transcription	Rectal Mucosa Donor 31	rectum
15	chr14:81931400-81938400	Weak transcription	HSMM	muscle
16	chr14:81931400-81938400	Weak transcription	Osteobl	bone
17	chr14:81931400-81938600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr14:81931400-81938800	Weak transcription	K562	blood
19	chr14:81931400-81940000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
20	chr14:81931400-81940200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
21	chr14:81931400-81940400	Weak transcription	NHDF-Ad	bronchial
22	chr14:81931400-81940600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
23	chr14:81931400-81940600	Weak transcription	Muscle Satellite Cultured Cells	--
24	chr14:81931400-81940800	Weak transcription	NHLF	lung
25	chr14:81931400-81941200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr14:81931400-81941200	Weak transcription	Left Ventricle	heart
27	chr14:81931400-81941400	Weak transcription	Fetal Intestine Large	intestine
28	chr14:81931400-81941600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
29	chr14:81931400-81941600	Weak transcription	Fetal Kidney	kidney
30	chr14:81931400-81941600	Weak transcription	NH-A	brain
31	chr14:81931400-81941800	Weak transcription	Colonic Mucosa	Colon
32	chr14:81931400-81941800	Weak transcription	HUVEC	blood vessel
33	chr14:81931400-81942000	Weak transcription	HUES64 Cell Line	embryonic stem cell
34	chr14:81931400-81942000	Weak transcription	Colon Smooth Muscle	Colon
35	chr14:81931400-81942000	Weak transcription	HMEC	breast
36	chr14:81931400-81942200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
37	chr14:81931400-81942200	Weak transcription	Brain Cingulate Gyrus	brain
38	chr14:81931400-81942400	Weak transcription	H1 Cell Line	embryonic stem cell
39	chr14:81931400-81942400	Weak transcription	Brain Angular Gyrus	brain
40	chr14:81931400-81942400	Weak transcription	Brain Hippocampus Middle	brain
41	chr14:81931400-81942400	Weak transcription	Right Ventricle	heart
42	chr14:81931400-81942400	Weak transcription	A549	lung
43	chr14:81931400-81942600	Weak transcription	Brain Germinal Matrix	brain
44	chr14:81931400-81942800	Weak transcription	Placenta Amnion	Placenta Amnion
45	chr14:81931400-81943000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
46	chr14:81931400-81943000	Weak transcription	Fetal Stomach	stomach
47	chr14:81931400-81943000	Weak transcription	Rectal Smooth Muscle	rectum
48	chr14:81931400-81943200	Weak transcription	Aorta	Aorta
49	chr14:81931400-81943200	Weak transcription	Brain Substantia Nigra	brain
50	chr14:81931400-81943200	Weak transcription	Fetal Intestine Small	intestine

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links