Variant report

Variant	rs12891474
Chromosome Location	chr14:22144020-22144021
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAFK	chr14:22143804-22144159	IMR90	lung:	n/a	chr14:22143970-22143985
2	MAFK	chr14:22143812-22144149	HepG2	liver:	n/a	chr14:22143970-22143985
3	MAFF	chr14:22143803-22144164	HepG2	liver:	n/a	chr14:22143968-22143986
4	MAFK	chr14:22143797-22144166	HepG2	liver:	n/a	chr14:22143970-22143985
5	MAFK	chr14:22143825-22144139	K562	blood:	n/a	chr14:22143970-22143985
6	MAFF	chr14:22143813-22144131	K562	blood:	n/a	chr14:22143968-22143986
7	MAFK	chr14:22143838-22144155	H1-hESC	embryonic stem cell:	n/a	chr14:22143970-22143985
8	MAFK	chr14:22143893-22144113	Hela-S3	cervix:	n/a	chr14:22143970-22143985

Variant related genes	Relation type
OR4E1	TF binding region

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10483255	0.95[YRI][hapmap]
rs10483256	0.87[CEU][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs11621611	0.81[CEU][hapmap]
rs11627252	0.87[CEU][hapmap];0.86[YRI][hapmap]
rs12432330	1.00[CHB][hapmap];0.88[ASN][1000 genomes]
rs12432570	1.00[CHB][hapmap];0.88[ASN][1000 genomes]
rs12435202	1.00[CHB][hapmap]
rs12435673	1.00[CHB][hapmap]
rs12880610	0.91[YRI][hapmap]
rs12880999	0.96[YRI][hapmap]
rs12882536	0.88[CEU][hapmap];0.95[YRI][hapmap]
rs12885776	0.91[YRI][hapmap]
rs12889057	1.00[CHB][hapmap];0.91[YRI][hapmap]
rs12892066	0.89[YRI][hapmap]
rs12894996	0.92[YRI][hapmap]
rs12898189	0.92[YRI][hapmap]
rs17108979	0.81[CEU][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes]
rs41415648	0.92[AFR][1000 genomes]
rs60301742	0.88[ASN][1000 genomes]
rs7149624	0.81[CEU][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes]
rs72686078	0.82[ASN][1000 genomes]
rs72686082	0.88[ASN][1000 genomes]
rs72686084	0.88[ASN][1000 genomes]
rs72686085	0.88[ASN][1000 genomes]
rs72686097	0.88[ASN][1000 genomes]
rs72686098	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2422459	chr14:21931624-22169502	Genic enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
2	nsv1042309	chr14:22042511-22866936	Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	90 gene(s)	inside rSNPs	diseases
3	nsv456147	chr14:22073473-22305071	Enhancers Bivalent Enhancer Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
4	nsv563851	chr14:22073473-22305071	Active TSS Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
5	nsv901479	chr14:22102800-22146832	Enhancers Bivalent Enhancer Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv510629	chr14:22134425-22215842	Weak transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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