Variant report

Variant	rs12892593
Chromosome Location	chr14:31854534-31854535
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:31854067..31858154-chr14:31887468..31890013,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000129493	Chromatin interaction
ENSG00000250365	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs34121318	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs61994180	0.83[EUR][1000 genomes]
rs6571420	0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2830427	chr14:31639110-32000034	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv1050597	chr14:31711248-31904761	Strong transcription Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	nsv901589	chr14:31768231-31944723	Active TSS Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
4	nsv1042776	chr14:31844026-32003929	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
5	nsv542019	chr14:31844026-32003929	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:116 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:31771000-31888800	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr14:31782200-31875200	Weak transcription	Gastric	stomach
3	chr14:31799800-31866800	Weak transcription	Esophagus	oesophagus
4	chr14:31801200-31883800	Weak transcription	Small Intestine	intestine
5	chr14:31801400-31862800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr14:31801400-31875600	Weak transcription	Brain Germinal Matrix	brain
7	chr14:31801600-31872400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr14:31801800-31862600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr14:31802800-31872000	Weak transcription	Fetal Brain Male	brain
10	chr14:31803600-31872600	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr14:31808000-31872600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
12	chr14:31809600-31872000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr14:31811800-31854600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
14	chr14:31812200-31857400	Weak transcription	Fetal Heart	heart
15	chr14:31813200-31872800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
16	chr14:31816000-31888800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
17	chr14:31825600-31872800	Weak transcription	Fetal Kidney	kidney
18	chr14:31825600-31878600	Weak transcription	Pancreas	Pancrea
19	chr14:31825800-31860200	Weak transcription	Psoas Muscle	Psoas
20	chr14:31827400-31874400	Weak transcription	Spleen	Spleen
21	chr14:31828000-31866800	Weak transcription	Colonic Mucosa	Colon
22	chr14:31830600-31862000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr14:31837000-31858400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr14:31837200-31871800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr14:31838000-31857200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
26	chr14:31838000-31875000	Weak transcription	K562	blood
27	chr14:31839000-31862400	Weak transcription	Ovary	ovary
28	chr14:31841000-31856000	Strong transcription	Fetal Intestine Large	intestine
29	chr14:31841400-31864800	Weak transcription	NHEK	skin
30	chr14:31841400-31872800	Strong transcription	Monocytes-CD14+_RO01746	blood
31	chr14:31841600-31872200	Strong transcription	Primary monocytes fromperipheralblood	blood
32	chr14:31842000-31855800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
33	chr14:31843600-31858200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
34	chr14:31844000-31862600	Weak transcription	Primary B cells from peripheral blood	blood
35	chr14:31844200-31865200	Weak transcription	Right Ventricle	heart
36	chr14:31845200-31861600	Weak transcription	HMEC	breast
37	chr14:31845600-31857600	Weak transcription	Rectal Smooth Muscle	rectum
38	chr14:31847000-31878600	Weak transcription	Primary hematopoietic stem cells	blood
39	chr14:31847600-31857600	Weak transcription	GM12878-XiMat	blood
40	chr14:31847600-31875000	Weak transcription	Stomach Mucosa	stomach
41	chr14:31847800-31857200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
42	chr14:31847800-31860800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
43	chr14:31847800-31865200	Weak transcription	NHLF	lung
44	chr14:31847800-31887400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
45	chr14:31848200-31856600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
46	chr14:31848400-31855200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
47	chr14:31848400-31858400	Strong transcription	Primary neutrophils fromperipheralblood	blood
48	chr14:31848600-31856400	Strong transcription	Adipose Nuclei	Adipose
49	chr14:31848600-31856600	Strong transcription	Left Ventricle	heart
50	chr14:31848600-31857800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links